PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0118s0053.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 272aa    MW: 30378 Da    PI: 5.2663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0118s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lv+ ++  G  +W+++++  g++R++k+c++rw +yl
  Kalax.0118s0053.1.p 14 KGPWTAEEDKKLVNFITGNGQCCWRAVPKLAGLKRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding50.45e-1670111447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++eE+   +d+++ lG++ W++Ia++++ gRt++++k++w+++
  Kalax.0118s0053.1.p  70 LSEEEERFVIDLHASLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111
                          589999999**********.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-21562IPR009057Homeodomain-like
PROSITE profilePS5129414.275961IPR017930Myb domain
SuperFamilySSF466898.24E-2711108IPR009057Homeodomain-like
SMARTSM007174.5E-121363IPR001005SANT/Myb domain
PfamPF002494.2E-141461IPR001005SANT/Myb domain
CDDcd001672.23E-81661No hitNo description
PROSITE profilePS5129427.58262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2463117IPR009057Homeodomain-like
SMARTSM007174.9E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1470111IPR001005SANT/Myb domain
CDDcd001671.98E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLVNFIT GNGQCCWRAV PKLAGLKRCG KSCRLRWTNY  60
LRPDLKRGLL SEEEERFVID LHASLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPITHRPIN KDQESTASVN ENKNLNHIKG QLGNADYINV DDEFCQVTTN GSHSVVSSSL  180
GDYRTNESNE SVKAGDGDGE GESKSLMDYV LSEAFWASLD QSELYGEGNA EGLANCWKEE  240
MEEEEGLLGG GSDFGVDWFF NDIIDMNIFN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855917.15e-88protein ODORANT1-like
RefseqXP_022156451.14e-88protein ODORANT1-like isoform X2
SwissprotQ50EX62e-85ODO1_PETHY; Protein ODORANT1
TrEMBLA0A218WS472e-87A0A218WS47_PUNGR; Uncharacterized protein
STRINGXP_004307827.13e-87(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-85myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]