PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0117s0004.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 272aa MW: 30210.8 Da PI: 5.4741

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0117s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++ G +W+++++ g++R++k+c++rw +yl Kalax.0117s0004.1.p 14 KGPWTAEEDKKLVSFITGNGQCCWRAVPKLAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.9	7.2e-16	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++eE+ l +d+++ lG++ W++Ia+++ gRt++++k++w+++ Kalax.0117s0004.1.p 70 LSEEEERLVIDLHASLGNR-WSKIAAKLS-GRTDNEIKNHWNTH 111 599**************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-21	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.172	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.86E-26	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.8E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.43E-8	16	61	No hit	No description
PROSITE profile	PS51294	27.151	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-24	64	117	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.5E-14	70	111	IPR001005	SANT/Myb domain
CDD	cd00167	5.34E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLVSFIT GNGQCCWRAV PKLAGLKRCG KSCRLRWTNY 60 LRPDLKRGLL SEEEERLVID LHASLGNRWS KIAAKLSGRT DNEIKNHWNT HIKKKLKKMG 120 IDPITHRPIN KDQESTASVN ENNNPNHIKG QLGNADYINV DDEFCEVTTN GSYSVVSSSL 180 GDYRAKASNE SVKAGDGDGE GESKSLMDYV LSEAFWASLD QSELYGEGNA KGLANCWKEE 240 IEEEEGLLGG GSDFGVDWFF NDIIDMNIFN L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-28	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307827.1	2e-87	PREDICTED: protein ODORANT1-like
Refseq	XP_021855917.1	7e-87	protein ODORANT1-like
Refseq	XP_028762533.1	3e-87	LOW QUALITY PROTEIN: protein ODORANT1-like
Swissprot	Q50EX6	9e-85	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A218WS47	1e-86	A0A218WS47_PUNGR; Uncharacterized protein
STRING	XP_004307827.1	7e-87	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	2e-84	myb domain protein 85

Link Out ? help Back to Top
Phytozome	Kalax.0117s0004.1.p

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]