PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0115s0104.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 354aa    MW: 39517 Da    PI: 10.2122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0115s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31284341359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Kalax.0115s0104.1.p 284 DDFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 341
                          99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-17235280IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.7E-33270342IPR003657WRKY domain
PROSITE profilePS5081129.631277343IPR003657WRKY domain
SuperFamilySSF1182907.06E-27280342IPR003657WRKY domain
SMARTSM007742.2E-38282342IPR003657WRKY domain
PfamPF031066.2E-27284341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MIDFSWQSGE EVCWLAMDEA EEANKAAVES CHRLLGLLSQ PQSHANGRNL MAETELTVRS  60
FKKVVSVLDR KLGHARFRKS KNLPSPRLFP PNVLLEGQAY RQENNLNQIN ASKSRMFDLL  120
EKKSLPESGL GLRNTTGFGN VAMEMSSSGK SPVQVTVQTA SGYQILQQQQ MKQQAEMMMM  180
YQKRSSGISL NFDSTSCTPT MSSTRSFLSS LSMDGSSFQL IGASRSMDQN SHPHRRKCSS  240
RGEDGSVKCG SSSRCHCSKK RKHRIKRSIK VPAISNKLAD IPPDDFSWRK YGQKPIKGSP  300
HPRGYYKCSS MRGCPARKHV ERCLEEPSML IVTYEGEHNH PRIPPQISQS ANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20275345775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672672.11e-143probable WRKY transcription factor 21
SwissprotQ9SR073e-90WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A059D2M11e-140A0A059D2M1_EUCGR; Uncharacterized protein
STRINGXP_010038933.11e-141(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.13e-63WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]