PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0114s0094.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 37000 Da PI: 4.6078 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.2e-10 | 259 | 299 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Kalax.0114s0094.1.p 259 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 299 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.199 | 249 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-12 | 253 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-14 | 253 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-11 | 255 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.65E-12 | 258 | 303 | No hit | No description |
Pfam | PF00010 | 5.9E-8 | 259 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MEQTGVMSEE AWTSLGGMYT SGEEAELLTQ LLSGFSYPNE AARAAAFWPG EETSNDSSSV 60 EMSGDLTMTM CFMDGSFLVG SDSNSNSTER FFSQENSNFG SPDDGQSGLF HEGTFFHSDR 120 SCQMMLVGNE FSEGLKVGEN SGASDSMDDL CEIKPVLDLE EPPKEVDIPE SKKRFRDASD 180 HVDKSKKGIK SSKYQKVIAV SSKNEPEQKR SDSKRPGSMK EDSNGSPEVT GGEASTSKSS 240 KAKKASKKAS SDPQSLYARK RRERINERLR ILQSLVPNGT KVDISTMLEE AVQYVKFLQL 300 QIKLLSSDET WMYAPLAYNG MDIGISNFDM LNTSPR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-32 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0114s0094.1.p |