PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0114s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 628aa MW: 68522.4 Da PI: 5.0004 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.9 | 9e-33 | 206 | 262 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgsefprsYY+Ct+++C+v+k+ver++ d++++ei+Y+++Hnh+ Kalax.0114s0030.1.p 206 EDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCEVRKQVERTH-DGQITEIVYKSNHNHP 262 7***************************************9.***************8 PP | |||||||
2 | WRKY | 104.4 | 6.3e-33 | 396 | 454 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+ +d+k+v++tYeg+Hnhe Kalax.0114s0030.1.p 396 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCLVRKHVERAPDDNKCVVTTYEGKHNHE 454 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-29 | 198 | 264 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.398 | 200 | 264 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-26 | 202 | 264 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 205 | 263 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-26 | 206 | 262 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.7E-35 | 381 | 456 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.896 | 391 | 456 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-28 | 391 | 456 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-38 | 396 | 455 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-25 | 397 | 454 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 628 aa Download sequence Send to blast |
MEPPDEYAVE EWNPAAAGSS SSSAPRMNPD PLIDPAVMMI PNSQPSPTTG SYYSPPFNQD 60 LSFLTNSMVA PTAAGGYCDS LPSFHGSEHP AGELNNLHYF KDLETQDLDG GFLNLPSQQL 120 PLEFELPVLS NEFIASASIR NDYIDVDFLS PADLSNAHTT LPLSQPNDHT TSQRNDPMYI 180 DGAADHVMEE EKRASSPRMG GMRTTEDGYN WRKYGQKQVK GSEFPRSYYK CTHPNCEVRK 240 QVERTHDGQI TEIVYKSNHN HPQPMPNRRL TPDSAFAQNE MDAGEGCGGG TSRGKNEGLD 300 RALSEPILTE LSPTGREKRF GAFDSSEAAE LASPPHNHAA EDDEAVEENM ADANEVHNDA 360 TDLRRAEDCM VEPSMSSRGV REQKIVVEIE TEVDILDDGY RWRKYGQKVV KGNPNPRSYY 420 KCTTPGCLVR KHVERAPDDN KCVVTTYEGK HNHEVPAAKN SSNASSNAGH LSSAHPVGQP 480 SHMPLAGSAA MTTPAQAQFQ PPPFESKPYM GNGFSAHSLP GNFGNDVSFG ASSMYPMQYG 540 SFGLAASYPN IQRAGLSISR SPILDSAAAN PMTLHYGFDN HRGGGVIQTA HPGDENDPPA 600 EGQSRTRRMM SQLMTPDQNQ TITASRL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-35 | 206 | 457 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-35 | 206 | 457 | 8 | 78 | Probable WRKY transcription factor 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G26640.1 | 8e-75 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0114s0030.1.p |