PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0113s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 245aa    MW: 27436.3 Da    PI: 5.4131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0113s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-1867117155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  ++rWv+e+r+p   +k+ r++lg++ tae+Aa+a++ a+++++g
  Kalax.0113s0004.1.p  67 PVYRGVRRRN-SNRWVCEVREP---NKKNRIWLGTYPTAEMAARAHDVAALAFRG 117
                          68*****888.8******9998...3369**********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1467117IPR001471AP2/ERF domain
SMARTSM003805.1E-2568131IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2068127IPR016177DNA-binding domain
PROSITE profilePS5103222.04968125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-3068127IPR001471AP2/ERF domain
PRINTSPR003671.8E-76980IPR001471AP2/ERF domain
CDDcd000185.98E-2869127No hitNo description
PRINTSPR003671.8E-791107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDVFSQYSDP LPFSSLYSQS TDPRDNSSAS DSRIGRTRSY SDEDIMLASS HPKKRAGRKK  60
FRETRHPVYR GVRRRNSNRW VCEVREPNKK NRIWLGTYPT AEMAARAHDV AALAFRGLKS  120
CLNFADSAWR LPVPASTDAA DIQRAAAEAA EMFRTSEDTD NLNKGNIVCT MGEASSGNNK  180
DEPNRQTQQG TSYYVDEEAI FDMPGLLNNM AEGLLLPPPS FLDGEFTWDN AENDTDLTLW  240
NHSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030036.11e-92PREDICTED: dehydration-responsive element-binding protein 1A
SwissprotQ9FJ931e-69DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLV9PCH85e-92V9PCH8_POPEU; C-repeat binding factor 4b
STRINGPOPTR_0012s13870.12e-91(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-64C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]