PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0112s0063.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25236.8 Da    PI: 9.1312
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0112s0063.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.87e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien + rqvtfskRrng+lKKA+ELSvLC+aeva+i+fs++gkl+e+s+
  Kalax.0112s0063.2.p  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIVFSTRGKLFEFSN 59
                         79***********************************************95 PP
2K-box70.93.8e-24911751397
                K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           +   + e++ ++++ie++ ++qR+l+Ged+esLs++eL + e+qLe+sl++iR+kKnell++qi++l++ eke+  en +Lrk+
  Kalax.0112s0063.2.p  91 PNMDIRDEISDMERQIEKMSSSQRKLKGEDVESLSINELIETEEQLEQSLSRIRAKKNELLRDQIQKLKQEEKEMLVENVRLRKE 175
                          4556789***************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.852161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-30377IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.55E-37373No hitNo description
PfamPF003196.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2091175IPR002487Transcription factor, K-box
PROSITE profilePS5129713.80592185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCE AEVALIVFST RGKLFEFSNS  60
TSGMRKTIDR YEKKTKGNDT KVEGADKHAD PNMDIRDEIS DMERQIEKMS SSQRKLKGED  120
VESLSINELI ETEEQLEQSL SRIRAKKNEL LRDQIQKLKQ EEKEMLVENV RLRKEAGIGS  180
GKPWQQKLLE QLPSPEKSDD CGVETELFIG LPEMRRSRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-16171169MEF2C
5f28_B5e-16171169MEF2C
5f28_C5e-16171169MEF2C
5f28_D5e-16171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026380237.15e-68MADS-box protein SOC1-like isoform X2
SwissprotO827437e-64AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA1BQ411e-66A1BQ41_VITVI; MADS-box protein
STRINGXP_008238753.12e-64(Prunus mume)
STRINGEOX961362e-64(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.13e-66AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]