PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0112s0063.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 25236.8 Da PI: 9.1312 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.8 | 7e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLC+aeva+i+fs++gkl+e+s+ Kalax.0112s0063.1.p 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIVFSTRGKLFEFSN 59 79***********************************************95 PP | |||||||
2 | K-box | 70.9 | 3.8e-24 | 91 | 175 | 13 | 97 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + + e++ ++++ie++ ++qR+l+Ged+esLs++eL + e+qLe+sl++iR+kKnell++qi++l++ eke+ en +Lrk+ Kalax.0112s0063.1.p 91 PNMDIRDEISDMERQIEKMSSSQRKLKGEDVESLSINELIETEEQLEQSLSRIRAKKNELLRDQIQKLKQEEKEMLVENVRLRKE 175 4556789***************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.852 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.5E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-30 | 3 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.55E-37 | 3 | 73 | No hit | No description |
Pfam | PF00319 | 6.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-20 | 91 | 175 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.805 | 92 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCE AEVALIVFST RGKLFEFSNS 60 TSGMRKTIDR YEKKTKGNDT KVEGADKHAD PNMDIRDEIS DMERQIEKMS SSQRKLKGED 120 VESLSINELI ETEEQLEQSL SRIRAKKNEL LRDQIQKLKQ EEKEMLVENV RLRKEAGIGS 180 GKPWQQKLLE QLPSPEKSDD CGVETELFIG LPEMRRSRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-16 | 1 | 71 | 1 | 69 | MEF2C |
5f28_B | 5e-16 | 1 | 71 | 1 | 69 | MEF2C |
5f28_C | 5e-16 | 1 | 71 | 1 | 69 | MEF2C |
5f28_D | 5e-16 | 1 | 71 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026380237.1 | 5e-68 | MADS-box protein SOC1-like isoform X2 | ||||
Swissprot | O82743 | 7e-64 | AGL19_ARATH; Agamous-like MADS-box protein AGL19 | ||||
TrEMBL | A1BQ41 | 1e-66 | A1BQ41_VITVI; MADS-box protein | ||||
STRING | XP_008238753.1 | 2e-64 | (Prunus mume) | ||||
STRING | EOX96136 | 2e-64 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 3e-66 | AGAMOUS-like 19 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0112s0063.1.p |
Publications ? help Back to Top | |||
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