PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0109s0065.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 251aa    MW: 28696.9 Da    PI: 5.7101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0109s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-15855148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT++Ed ll ++v ++G ++W+ +a+  g++Rt+k+c++rw +yl
  Kalax.0109s0065.1.p  8 KGPWTEQEDYLLTNVVGLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYL 55
                         79********************************************97 PP
2Myb_DNA-binding54.33e-1761106148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Kalax.0109s0065.1.p  61 RGKMTAQEEHLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.429355IPR017930Myb domain
SuperFamilySSF466891.35E-286102IPR009057Homeodomain-like
SMARTSM007178.4E-14757IPR001005SANT/Myb domain
PfamPF002491.8E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-19962IPR009057Homeodomain-like
CDDcd001671.32E-91055No hitNo description
PROSITE profilePS5129426.69356110IPR017930Myb domain
SMARTSM007172.4E-1560108IPR001005SANT/Myb domain
PfamPF002491.4E-1561105IPR001005SANT/Myb domain
CDDcd001675.49E-1163106No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2363109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAHEEIRKGP WTEQEDYLLT NVVGLFGDRR WDFVAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGKMTAQEEH LVLELHAKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA LKQKQTTSSS  120
MTSSDSSSSS NPTLDSLSPD TEKESFYDTG GLVAEPSLDG NKQAQEIVDR GYSMDDIWKD  180
LDMTDESPIS QLYGTFSEGS NFYCPPPVSP VWDYCSSSFW KLDDEESKMF LPSTNLPTYY  240
DLTEAPSYGY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2751101105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019076057.11e-102PREDICTED: transcription factor MYB59
SwissprotQ4JL842e-82MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A438G1I01e-100A0A438G1I0_VITVI; Transcription factor MYB59
TrEMBLF6GV451e-100F6GV45_VITVI; Uncharacterized protein
STRINGVIT_06s0004g04140.t011e-101(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-82myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]