PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0107s0097.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 322aa    MW: 34848.9 Da    PI: 9.3537
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0107s0097.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.7e-29152210158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dgy+WrKYGqK+ +++++pr+Y++C++a +C+vkkkv+rsaed+++++ tY geHnh
  Kalax.0107s0097.1.p 152 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApTCQVKKKVQRSAEDQTMLVATYDGEHNH 210
                          58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-28143213IPR003657WRKY domain
PROSITE profilePS5081125.488147213IPR003657WRKY domain
SuperFamilySSF1182902.48E-24149213IPR003657WRKY domain
SMARTSM007741.1E-32152212IPR003657WRKY domain
PfamPF031061.8E-23153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEPSAWVDSS LSLALNLNPH FHSHAAPSKP QIKKEEDLAE ELSRVSSENR KLTQMLTAMY  60
ENYSALQTQF ADLMQRTSAT SATATKRKSP ESGGDGAQTD QSSSSSGDES HVFKKPRDNS  120
CGGRVVATGI IRRKPSSKVL VRTDKSDTSL IVKDGYQWRK YGQKVTRDNP CPRAYFKCSF  180
APTCQVKKKV QRSAEDQTML VATYDGEHNH LPPSELDHGS QRSSNLGPAT TNSVGSSTVS  240
PSKPTVTLDL IQPVEEARLN NRTGLGAVEG GNNRQPVFQQ IIVEQMASSL TNDPGFKAAV  300
AAAISGRMME SSNGSMVGKW L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-191512141678Probable WRKY transcription factor 4
2lex_A8e-191512141678Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054278.13e-87PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLA0A1U8Q6528e-86A0A1U8Q652_NELNU; probable WRKY transcription factor 40 isoform X2
STRINGXP_010265617.14e-84(Nelumbo nucifera)
STRINGXP_010275778.12e-84(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-61WRKY DNA-binding protein 40