PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0107s0096.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 306aa    MW: 34131.3 Da    PI: 8.5775
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0107s0096.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-29121180260
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+rs ed++++++ Yeg+Hnh+k
  Kalax.0107s0096.2.p 121 RDGYQWRKYGQKVTKDNPSPRAYFRCAMApTCPVKKKVQRSVEDETILVVSYEGHHNHSK 180
                          7***************************99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-28113180IPR003657WRKY domain
SuperFamilySSF1182902.75E-24116179IPR003657WRKY domain
SMARTSM007742.0E-32120180IPR003657WRKY domain
PROSITE profilePS5081124.409122181IPR003657WRKY domain
PfamPF031069.4E-24122178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEEGAVEEMR KENARLRHIV KHLQAEADGR RGKRGAAAAG MDDFDGDQQL KHSCHLSTKG  60
DDCYCYGASS ETTPHVDHEM VNGIKRPRMM PCLQVHTKSG NKAYQVFVRT NDTRDKSLSV  120
RDGYQWRKYG QKVTKDNPSP RAYFRCAMAP TCPVKKKVQR SVEDETILVV SYEGHHNHSK  180
IGFEPPQVLH LASSPTLDSS STIHTTPSLT ISGSNVNPFT KPTVTLDLSL SGNHQFSNNN  240
TDQETPTSSK FTPSFDSRNL FEKWDKMNGQ FIGEYVASLT RDPNFSMALA MAVVRSMPDM  300
STRPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-181201781471WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A438FZA74e-52A0A438FZA7_VITVI; WRKY transcription factor 18
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-39WRKY DNA-binding protein 40