PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0107s0055.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 416aa MW: 45121.6 Da PI: 6.1923

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0107s0055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Kalax.0107s0055.1.p 194 YECKTCNRTFPSFQALGGHRASH 216 99**********99999998887 PP
2	zf-C2H2	13.2	0.00027	278	300	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Kalax.0107s0055.1.p 278 HECSICGAEFSSGQALGGHMRRH 300 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	7.8E-13	193	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.84E-8	193	216	No hit	No description
PROSITE profile	PS50157	10.159	194	221	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	194	216	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	196	216	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.84E-8	273	300	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-4	274	302	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	9.0E-13	278	302	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	278	300	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.616	278	305	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	280	300	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MDYAHNNSTK LQQDDNVSNN VSLIDNGCGR VNDDDDDDDA VGLIKIKATT TSGSINSNPS 60 GAPRKKEDDE EEQAQMKNHD NVVTATFQPP TTLITTMMIV KGKRTKRQRL HSPVVLHSYN 120 GNDTAQEEGE DEEEEEEDDE AAEELDMANC LILLARGQSP SIRRNELGLF TKLSSSSKRF 180 SSENKRVHGT SSVYECKTCN RTFPSFQALG GHRASHKKLK ITANDHFRQS AISDNTHSPP 240 SPLVITPSPS TLSLQLGNIN YYSRAPSAHT NKSGHKIHEC SICGAEFSSG QALGGHMRRH 300 RGPMITLNSS TTTTTTTTTT TNNNNNPIAN TTLSLSTVIA VESPDTAAAK VNRINASNNN 360 GLLSLDLNLP ASPSPSPEDH DHTNFSLAPK QPQPQQPQQQ SAVVFSTPAL VDCFY*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MDYAHNNSTK LQQDDNVSNN VSLIDNGCGR VNDDDDDDDA VGLIKIKATT TSGSINSNPS  60
GAPRKKEDDE EEQAQMKNHD NVVTATFQPP TTLITTMMIV KGKRTKRQRL HSPVVLHSYN  120
GNDTAQEEGE DEEEEEEDDE AAEELDMANC LILLARGQSP SIRRNELGLF TKLSSSSKRF  180
SSENKRVHGT SSVYECKTCN RTFPSFQALG GHRASHKKLK ITANDHFRQS AISDNTHSPP  240
SPLVITPSPS TLSLQLGNIN YYSRAPSAHT NKSGHKIHEC SICGAEFSSG QALGGHMRRH  300
RGPMITLNSS TTTTTTTTTT TNNNNNPIAN TTLSLSTVIA VESPDTAAAK VNRINASNNN  360
GLLSLDLNLP ASPSPSPEDH DHTNFSLAPK QPQPQQPQQQ SAVVFSTPAL VDCFY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	6e-34	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0107s0055.1.p