PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0107s0025.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 350aa MW: 38086.1 Da PI: 7.4117

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0107s0025.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.4e-31	189	246	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers edp++v++tYeg+H h+ Kalax.0107s0025.2.p 189 EDGYRWRKYGQKAVKNSPYPRSYYRCTNTKCTVKKRVERSCEDPTTVITTYEGQHCHQ 246 8*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-32	173	246	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	180	247	IPR003657	WRKY domain
PROSITE profile	PS50811	29.907	183	248	IPR003657	WRKY domain
SMART	SM00774	8.6E-36	188	247	IPR003657	WRKY domain
Pfam	PF03106	6.3E-24	189	246	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MDGAREVPER SEPLEYDSLE YDSESRYLFD DMSTTECSIL SEFGWATTSS NLHLHRHRHH 60 HHHQPIDDPF IDFATSSISK SESIGSVRGG GGGGSGLLRF AETPPVTVAA EGNTSCGASR 120 LVEQASTSNP SVSSSSSDQD LAAEKSIGSG ETPPSSLQIP SGKSKKKGQP RIRQPRFAFV 180 TKSEVDHLED GYRWRKYGQK AVKNSPYPRS YYRCTNTKCT VKKRVERSCE DPTTVITTYE 240 GQHCHQIAGF PRGGALSIRG AAFGGQMGPP NSQYYYPGMQ HVPHQSPNSS AAPTPIPTSV 300 TDNEPKEASR MMILSTEPQL PQPASTPQVT SNEGLLGDIV SPRRRNLHP*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MDGAREVPER SEPLEYDSLE YDSESRYLFD DMSTTECSIL SEFGWATTSS NLHLHRHRHH  60
HHHQPIDDPF IDFATSSISK SESIGSVRGG GGGGSGLLRF AETPPVTVAA EGNTSCGASR  120
LVEQASTSNP SVSSSSSDQD LAAEKSIGSG ETPPSSLQIP SGKSKKKGQP RIRQPRFAFV  180
TKSEVDHLED GYRWRKYGQK AVKNSPYPRS YYRCTNTKCT VKKRVERSCE DPTTVITTYE  240
GQHCHQIAGF PRGGALSIRG AAFGGQMGPP NSQYYYPGMQ HVPHQSPNSS AAPTPIPTSV  300
TDNEPKEASR MMILSTEPQL PQPASTPQVT SNEGLLGDIV SPRRRNLHP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	181	247	10	76	Probable WRKY transcription factor 4
2lex_A	1e-25	181	247	10	76	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9C983	4e-61	WRK57_ARATH; Probable WRKY transcription factor 57
STRING	POPTR_0008s09360.1	6e-74	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	1e-60	WRKY DNA-binding protein 57

Link Out ? help Back to Top
Phytozome	Kalax.0107s0025.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Y,Qiu Y,Hu Y,Yu D Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa. Front Plant Sci, 2016. 7: p. 145 [PMID:26904091] Jiang Y,Yu D The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance. Plant Physiol., 2016. 171(4): p. 2771-82 [PMID:27268959] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]