PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0106s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 333aa    MW: 36755.8 Da    PI: 7.3435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0106s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32135193259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          dD ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+ver+++dp+++++tY+ eHnh+
  Kalax.0106s0018.1.p 135 DDTWSWRKYGQKPIKGSPFPRGYYRCSSSkGCPARKQVERNRSDPSMFIVTYTAEHNHP 193
                          8**************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.545129195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-32131195IPR003657WRKY domain
SuperFamilySSF1182903.4E-27133195IPR003657WRKY domain
SMARTSM007744.2E-39134194IPR003657WRKY domain
PfamPF031061.9E-27135193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDEDWDLHAV VRGCRVSSLT DSKQAAAAAL DEDTASDRLG CFIYSSKSLD QQLSLPPPPQ  60
PQEDLCDLYR PFFLPLSSAV VTSVSPPPQL TTMPKTPDQG QPPHNNASAA TPRSKRRKNQ  120
FKKVRHVPAE GLSSDDTWSW RKYGQKPIKG SPFPRGYYRC SSSKGCPARK QVERNRSDPS  180
MFIVTYTAEH NHPPPTHRNS LAGTTRHQHK LDTFPPASTI QQHPKPTTST SSAFTSTSSS  240
DDDEDDSADV RQGTKTENQF EDLVMGLGLH QHSKNNMDMT PTDNFFDGLA EIAAPPRSSG  300
LDVFPLSWLA NSTGQQAVKK QKVVELEQQV VW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-23118196280Disease resistance protein RRS1
5w3x_D5e-23118196280Disease resistance protein RRS1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-55WRKY family protein