PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0105s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 32490.3 Da PI: 6.5035 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.6e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W ++Ed+ l +++ G g+Wk+ +++ g++R++k+c++rw +yl Kalax.0105s0016.1.p 14 KGAWCAQEDQALTAYITANGEGSWKSLPQKAGLNRCGKSCRLRWINYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++Ed++l++++++lG++ W++Iar+++ gRt++++k++w++ Kalax.0105s0016.1.p 67 RGGFTQDEDDILIKLHTLLGNR-WALIARRLP-GRTDNEIKNYWNTT 111 788*******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.984 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.65E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.84E-6 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.618 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.04E-13 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRTPCCAKV GVNKGAWCAQ EDQALTAYIT ANGEGSWKSL PQKAGLNRCG KSCRLRWINY 60 LKPGIKRGGF TQDEDDILIK LHTLLGNRWA LIARRLPGRT DNEIKNYWNT TLSKKVKKTT 120 TTNNNTVTNN GQPPSPDPQN CHLEFAIKRP SRSIDHHRND GDDHHVVHYV KAFRCKKVVL 180 PASLLPAPLS EEEEEEAGGH QLMSNNGGSV SNNNVESKQQ QQQQQDDDNM IRSDLLIWED 240 VVAGGGDGLM SGGSSSISWA SFSTEDSADL LVSMDCCEDM PDWSALEKIY GSFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_009340436.1 | 4e-63 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-55 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0105s0016.1.p |