PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0099s0053.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27142 Da    PI: 9.2051
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0099s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.2e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr g+lKKA E+SvLCda+va+i+fs++gkl ey++
  Kalax.0099s0053.1.p  9 KRIENKINRQVTFSKRRSGLLKKACEISVLCDADVALIVFSTKGKLSEYAT 59
                         79***********************************************86 PP
2K-box94.22.1e-318617412100
                K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                            + s++ e+akL+ +ie Lqr+qR+l+GedL+sLsl+eLq++e+qLe++lk+iR kKn+l+  +i elqkk k +q en+ L kk++e
  Kalax.0099s0053.1.p  86 ISTGSWSLEHAKLRHRIELLQRNQRNLVGEDLDSLSLRELQNVEHQLENALKHIRLKKNQLMNLSIVELQKKDKIMQAENNFLGKKIKE 174
                          45789*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.838161IPR002100Transcription factor, MADS-box
CDDcd002651.10E-38279No hitNo description
SuperFamilySSF554559.81E-32288IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.37988178IPR002487Transcription factor, K-box
PfamPF014865.2E-2589172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KACEISVLCD ADVALIVFST KGKLSEYATD  60
ASMERILERY ESYSSSDKQI VSTDLISTGS WSLEHAKLRH RIELLQRNQR NLVGEDLDSL  120
SLRELQNVEH QLENALKHIR LKKNQLMNLS IVELQKKDKI MQAENNFLGK KIKESEKALA  180
ELGQLDCQSQ DASQPPIKMS EPTTQHVDIN REISSGEGST DQNQPCTALL PWMLRGPSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-22188187Myocyte-specific enhancer factor 2B
1tqe_Q8e-22188187Myocyte-specific enhancer factor 2B
1tqe_R8e-22188187Myocyte-specific enhancer factor 2B
1tqe_S8e-22188187Myocyte-specific enhancer factor 2B
6byy_A7e-22188187MEF2 CHIMERA
6byy_B7e-22188187MEF2 CHIMERA
6byy_C7e-22188187MEF2 CHIMERA
6byy_D7e-22188187MEF2 CHIMERA
6c9l_A8e-22188187Myocyte-specific enhancer factor 2B
6c9l_B8e-22188187Myocyte-specific enhancer factor 2B
6c9l_C8e-22188187Myocyte-specific enhancer factor 2B
6c9l_D8e-22188187Myocyte-specific enhancer factor 2B
6c9l_E8e-22188187Myocyte-specific enhancer factor 2B
6c9l_F8e-22188187Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625854.13e-98PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424297e-94AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1S3YGF66e-97A0A1S3YGF6_TOBAC; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009625854.11e-97(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-87AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]