PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0098s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 146aa    MW: 16182.6 Da    PI: 9.997
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0098s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.93.9e-10108133126
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaC 26 
                          C +Cg+ kTp+WR gpdg+ktL  +C
  Kalax.0098s0012.1.p 108 CKHCGSEKTPHWRAGPDGPKTLSLQC 133
                          *********************96666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-5101129No hitNo description
PROSITE profilePS501148.669102125IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.5E-6106129IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.4E-7108133IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVIKWTRVPS VETFVDMIPV ESTTLKQESP ISVLENSNSS FGSNNSHAVI TICCSGRDLA  60
PPIRRRCQRG RFVDIPSQKW FVWCSNIQPN KTGNGAAKTT SGITGRKCKH CGSEKTPHWR  120
AGPDGPKTLS LQCLWRQIQV WEAMP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A438HVL81e-14A0A438HVL8_VITVI; GATA transcription factor 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.17e-13GATA transcription factor 1