PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0095s0091.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25366.9 Da    PI: 7.9994
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0095s0091.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.9e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +ri+n + rqvtfskRr+g+lKKA+ELS+LCd++v v+ifsstgkly+y+s
  Kalax.0095s0091.2.p  9 ERIDNITSRQVTFSKRRKGLLKKAKELSILCDVQVGVMIFSSTGKLYDYAS 59
                         69***********************************************86 PP
2K-box75.61.3e-2582171998
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          +++++ +++++e+a L  ++++Lq  +R++ Ge+L+ L+++eLq+Le+qLe  lk iR kK+e+l+++ieel+++   +q+en +L+++ 
  Kalax.0095s0091.2.p  82 NSNSDVKYWKNEAATLLHQLQSLQDDHRKVFGEQLSGLTIRELQHLENQLEMNLKCIRMKKDEILIAEIEELRQQGSLIQQENLDLQNQA 171
                          578899********************************************************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.871161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.59E-37278No hitNo description
SuperFamilySSF554553.4E-29290IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-263859IPR002100Transcription factor, MADS-box
PfamPF014869.8E-2384170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.05487178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGKIVIER IDNITSRQVT FSKRRKGLLK KAKELSILCD VQVGVMIFSS TGKLYDYASN  60
GSIKTTIEQY NRVKGDKLHL ANSNSDVKYW KNEAATLLHQ LQSLQDDHRK VFGEQLSGLT  120
IRELQHLENQ LEMNLKCIRM KKDEILIAEI EELRQQGSLI QQENLDLQNQ AMCHITNGEM  180
TAALHTDALR CENGTPVQVQ LQLSQPQPQS TDSASGNISL GLHLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-18187184MEF2C
5f28_B7e-18187184MEF2C
5f28_C7e-18187184MEF2C
5f28_D7e-18187184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175063.12e-82PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotQ9SZJ67e-72AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A0R0FWL72e-80A0A0R0FWL7_SOYBN; Uncharacterized protein
STRINGGorai.008G018100.11e-78(Gossypium raimondii)
STRINGXP_010060121.12e-78(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.18e-68AGAMOUS-like 44
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]