PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0094s0038.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26514.2 Da PI: 8.4696 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 128 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ tae+Aa a+++a+ +++g Kalax.0094s0038.1.p 128 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAFQMRG 178 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.55E-30 | 127 | 186 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.1E-32 | 127 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.434 | 128 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-14 | 128 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-23 | 128 | 188 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-38 | 128 | 192 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 129 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MCDQVCSEND LAFLESIRRH LLDDSEIPMM FPTPGSSAAA AAAPRYARTS SFSSLFTENW 60 GELPLKENDS EDMVLFGVLR DAASAGWIPC LTPNKQGMMG VKAEPVVENG REGGVVVMPV 120 VVPAKGKHYR GVRRRPWGKF AAEIRDPAKN GARVWLGTYE TAEDAALAYD RAAFQMRGSR 180 ALLNFPLRIN SGEPAPVRIT AKRNSPEPSS SSESMASPKR MRKEVKKEEV SIWTGGDQLL 240 VS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-42 | 124 | 193 | 1 | 70 | ATERF1 |
3gcc_A | 2e-42 | 124 | 193 | 1 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008437026.2 | 3e-86 | PREDICTED: ethylene-responsive transcription factor 1A-like | ||||
Swissprot | O80337 | 5e-74 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | A0A0F6RA57 | 9e-85 | A0A0F6RA57_9ROSI; Ethylene response factor 1-like protein ERF1-2 | ||||
TrEMBL | A0A1S3AT63 | 8e-85 | A0A1S3AT63_CUCME; ethylene-responsive transcription factor 1A-like | ||||
STRING | XP_008437026.1 | 6e-85 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-62 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0094s0038.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|