PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0093s0071.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 518aa    MW: 56834.1 Da    PI: 7.4617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0093s0071.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.4e-33193249259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgse+prsYY+Ct++gCp+kkkvers  d++++ei+Y+g+Hnh 
  Kalax.0093s0071.1.p 193 DDGYNWRKYGQKQVKGSENPRSYYKCTFPGCPTKKKVERSL-DGDITEIVYKGSHNHA 249
                          8****************************************.***************7 PP
2WRKY105.72.4e-33362420159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  Kalax.0093s0071.1.p 362 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 420
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29183251IPR003657WRKY domain
SuperFamilySSF1182901.44E-25186251IPR003657WRKY domain
PROSITE profilePS5081124.03187251IPR003657WRKY domain
SMARTSM007744.7E-36192250IPR003657WRKY domain
PfamPF031063.4E-25193248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37347422IPR003657WRKY domain
SuperFamilySSF1182902.62E-29354422IPR003657WRKY domain
PROSITE profilePS5081138.377357422IPR003657WRKY domain
SMARTSM007743.1E-39362421IPR003657WRKY domain
PfamPF031068.0E-26363420IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAASSANSPF SLSPSFMNNS FSDLLNSPAA VAPGDDSTLL NGSVNRGAPK FKSLHPPSLL  60
PVSPTPASPS SYFAFPPGLS PSELLDSPVL LTSSYLLPSP TTGSFPAAQP HNWSVSGQHD  120
VKPEDSRNQN NTSSYSDFTF QPELRTVSQQ PWNFKSYQSQ QKTDSISNER VSGDYSSYQP  180
APIQSVREAR RSDDGYNWRK YGQKQVKGSE NPRSYYKCTF PGCPTKKKVE RSLDGDITEI  240
VYKGSHNHAK PQSTRRSASN GSHPMQHVNG ELQAQEHSVG SQMVANQLSD HSAATPENSS  300
VSVGDDDRSS SRRVGDDKLD DDEPDHKRWK RENEGEIMSA PGCRAVREPR VVVQTTSDID  360
ILDDGYRWRK YGQKVVKGNP NPRSYYKCTN PGCPVRKHVE RASHDLRAVI TTYEGKHNHD  420
VPAARGSGSH SRQAAANNSC VTNSTHHQSS TGQPATAQQA PFTLEMLHGP ESFGFGNPVS  480
AYNNVNGRQQ NPDCSVFPRT KEEPREDQFL ESICYAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37183423878Probable WRKY transcription factor 4
2lex_A2e-37183423878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539942e-54BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142085.11e-172hypothetical protein PHAVU_008G251300g
SwissprotQ6IEQ71e-130WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLV7B8C11e-171V7B8C1_PHAVU; Uncharacterized protein
STRINGXP_007142085.11e-172(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-101WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]