PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0092s0036.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 281aa MW: 30268.1 Da PI: 9.1859

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0092s0036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.8	2.4e-38	14	72	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCdstntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rk++++ Kalax.0092s0036.1.p 14 QTSLSCPRCDSTNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKSHSK 72 56789**************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	11	69	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-33	16	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGYVMDQRKQ EHRQTSLSCP RCDSTNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV 60 PVGGGCRKSH SKRVRKPSSS SLPHHPPPSS ASSSHLADHA LALPSPSVAG ASNTLAPLFY 120 GTVDLSGGGR YEDLMRGSGY SDMNDISNSN DGFLSGYNRP LLAPPLGSGS ALALAGGGRG 180 SSSQQGHQLL QRVFPFQPSG ESASGGQLLI DPQAQTWNTD SHHVDQHRHQ HQHQQQPRSD 240 DRGHDSSSAY WAGGGGRSDN LASWPPDQLA SLDGSSNIQR *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003815	2e-34	AP003815.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1163_G04.
GenBank	AP014963	2e-34	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	2e-34	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	2e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Kalax.0092s0036.1.p