PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0088s0012.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25517.9 Da    PI: 9.628
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0088s0012.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF849e-271059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v++fsstgkl++++s
  Kalax.0088s0012.2.p 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMVFSSTGKLHDFAS 59
                         8***********************************************86 PP
2K-box87.82.2e-2978170898
                K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                          +  +++++ + +q+e++ L++++++Lq+++R+l+G+dL+ L +k+Lq+Le+qLeksl++iR++K++ll+++i+el +k + +++en +L 
  Kalax.0088s0012.2.p  78 QlmNSSSEIKFWQREANMLRQQLQSLQETHRQLMGDDLSGLGIKDLQNLENQLEKSLRSIRTTKDQLLIDEIQELNRKGNIIHQENLELY 167
                          13468899*********************************************************************************9 PP

                K-box  96 kkl 98 
                          +k+
  Kalax.0088s0012.2.p 168 QKV 170
                          996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.118161IPR002100Transcription factor, MADS-box
CDDcd002651.76E-45278No hitNo description
SuperFamilySSF554551.57E-31291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-27323IPR002100Transcription factor, MADS-box
PfamPF003199.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-2883170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.30186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKVVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMVFSS TGKLHDFAST  60
SMKSVIDRYN KSKEDQHQLM NSSSEIKFWQ REANMLRQQL QSLQETHRQL MGDDLSGLGI  120
KDLQNLENQL EKSLRSIRTT KDQLLIDEIQ ELNRKGNIIH QENLELYQKV YVTRDAHQTN  180
GMNRTPVIRY DLDEAHVPVN LQLCQPQHQN YETPTRATNL G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19182182MEF2C
5f28_B1e-19182182MEF2C
5f28_C1e-19182182MEF2C
5f28_D1e-19182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024168990.11e-121MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP491e-97MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8PCJ81e-116A0A1U8PCJ8_GOSHI; MADS-box transcription factor 23-like isoform X5
TrEMBLA0A1U8PF711e-116A0A1U8PF71_GOSHI; MADS-box transcription factor 23-like isoform X6
STRINGXP_006472406.11e-114(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-99AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]