PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0085s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 18885.7 Da PI: 10.1495 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 7.1e-18 | 56 | 107 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y GVr ++ +g+++AeIrd + ng r++lg+f+tae Aa a+++a+++ +g Kalax.0085s0037.1.p 56 SSYIGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAESAALAYDQAALARRG 107 6799******.**********44465..**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.88E-21 | 56 | 115 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.87E-27 | 56 | 114 | No hit | No description |
Pfam | PF00847 | 2.0E-12 | 56 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.929 | 57 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-27 | 57 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-30 | 57 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSCTGPTQFI TPSLHISITQ QQHCSFQFPA TGITSQPSPE NFINLNEAVR LGKEQSSYIG 60 VRKRPWGKFA AEIRDSTRNG VRVWLGTFDT AESAALAYDQ AALARRGPMA LLNFWEELVR 120 GSLRELKCTV EENGSPVLAL KKKHSKKLIN KVFVARTKGA IDLHSINQCL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-26 | 51 | 122 | 8 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019181066.1 | 1e-44 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | Q8VYM0 | 6e-41 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A2J6L579 | 2e-40 | A0A2J6L579_LACSA; Uncharacterized protein | ||||
TrEMBL | Q8GZE9 | 4e-40 | Q8GZE9_SOLLC; Ethylene responsive element binding protein | ||||
STRING | Solyc09g089930.1.1 | 2e-40 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 1e-27 | ethylene-responsive element binding factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0085s0037.1.p |
Publications ? help Back to Top | |||
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