PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0085s0032.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 38953.6 Da PI: 6.3503 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.2e-16 | 15 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 rg W++eEd + +v ++G+g+W++++++ ++R++k+c++rw++yl Kalax.0085s0032.1.p 15 RGVWSPEEDAKMMAYVSKYGTGNWTAVPKKAAsgagLRRCGKSCRLRWNNYL 66 899************************************************7 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 73 | 115 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T++E+el+++++ G++ W+ Ia+ ++ gRt++++k++w++ Kalax.0085s0032.1.p 73 DNFTPQEEELIIKLHGAIGTR-WSIIAQQLP-GRTDNDVKNYWNS 115 68*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-25 | 6 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.29 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-30 | 12 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 14 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 15 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.06E-10 | 18 | 66 | No hit | No description |
PROSITE profile | PS51294 | 23.529 | 67 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-23 | 71 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 71 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.21E-10 | 74 | 117 | No hit | No description |
Pfam | PF00249 | 5.4E-13 | 74 | 115 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MMAQSTCCEK MSVKRGVWSP EEDAKMMAYV SKYGTGNWTA VPKKAASGAG LRRCGKSCRL 60 RWNNYLRPDL KHDNFTPQEE ELIIKLHGAI GTRWSIIAQQ LPGRTDNDVK NYWNSKLRKK 120 LQDMGIDPVT HKPYSQILAD YGSIGGLRKF GHSLNKDLKN AFTQIEGNPE EQFVHFSCRD 180 GQVRGAQSHQ NVHESTDLLD QLQAIKKFTE AAPSSKNIET AVTASPQWGY GHPTLSPTSS 240 SSSSACSAGN TSSSLQGLNW QDYLLDDVFV PSEDNMAEYF MSGNTDGSRK IEGPEPAQAL 300 SQSKNIVMDH HGSGATVIRA SDASFLDDML AKENEMMLLE FPSLLEDSTF ES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-28 | 15 | 121 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028119397.1 | 1e-103 | transcription factor MYB35-like | ||||
TrEMBL | A5C7N1 | 1e-101 | A5C7N1_VITVI; Uncharacterized protein | ||||
STRING | cassava4.1_031039m | 1e-101 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 2e-65 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0085s0032.1.p |