PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0081s0084.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 432aa MW: 47212 Da PI: 6.4488 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd++lv+++++ G g+W++ +++ g+ R++k+c++rw +yl Kalax.0081s0084.1.p 14 RGRWTAEEDDILVNYINKNGIGSWRSLPKKAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 6.7e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +E++ ++++++ lG++ W++Ia+ ++ gRt++++k++w++ Kalax.0081s0084.1.p 67 RGNFTGDEQDTIIKLHASLGNK-WSLIANQLP-GRTDNEIKNYWNST 111 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.131 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.33E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.01E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.602 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MGRAPCCAKV GLNRGRWTAE EDDILVNYIN KNGIGSWRSL PKKAGLLRCG KSCRLRWINY 60 LRSDLKRGNF TGDEQDTIIK LHASLGNKWS LIANQLPGRT DNEIKNYWNS TLSRRVDTFR 120 RPVDEGHSQV LISGLTSSSG AAGEGAVTIV AVNRRRGRTS RAAMKKNKSG INERSNKSKQ 180 VGGNQALYES NPIHSSSYNL SSITATLSRS HSSGSSITSA ATATSSPLLT LPQTPNLEKE 240 GCLLLPADDE DHALESLVLE SLLTSQNDTQ RGAQHQGDLV SKDASDCERV DLSFDDIGNF 300 DVELVEVNGA SGVLAGSRSS NDTINNKSSS SSNNVGHGVL KEAILNHQSM ILGFEECASL 360 GADWDWQNIV HQDDYHNNNQ QWSSNIEEDG SIAWLWDYAH HQDSGGNNGV GKNQEKYFEE 420 HREAMVAWLL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 3e-70 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0081s0084.1.p |