PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0080s0037.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 446aa    MW: 50499.4 Da    PI: 4.7384
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0080s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS235.22.9e-72664373373
                 GRAS   3 elLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklf 84 
                          +lLl  Aea+++++   a+++++rl e        ++g+++ Rla++ft++L+++l    + l + ++ + +++     ++++++a++++
  Kalax.0080s0037.1.p  66 DLLLMGAEALEAQNWYGASTVISRLYEVlnhqePGEHGNAFSRLASFFTKGLHEKLDVAHPPLQRPVHQEVQETVIfrqEKNTMSAFQML 155
                          789999**********99999999876633324556789*******************9999999886666654436668999999**** PP

                 GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                          +e++P++kf+h+taNqaIlea++g+e+vHiiDfdi+ G+QWp+++  L+ R++   sl+iT+ + ++++  +++++++tg+rL++fA+++
  Kalax.0080s0037.1.p 156 QELTPYVKFAHFTANQAILEATKGDEQVHIIDFDIMDGIQWPPFMTDLTLRQNA--SLKITAAVTSTASkrEANMTQQTGRRLKEFADSI 243
                          ***************************************************776..9****98887766789999*************** PP

                 GRAS 173 gvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFler 256
                          ++pf fn + ++r edl++ +   ++   g ++  n++++ ++++++s s+      +L+ vk+l+ kv+v+ve+e   +++ s+sF++ 
  Kalax.0080s0037.1.p 244 NLPFTFNSFFMTREEDLDMIMDPSQTgcpGPKVTANCIVNQFYMPQKSSSQVG---MFLNGVKKLNLKVLVLVEEElhsLSTKSSSFVDF 330
                          ********9888888886655444446679999***********966666666...********************554455889***** PP

                 GRAS 257 flealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                          f+eal++y a+ +sl ++ + + +   ++vE +llg +i +      ++rr +       +e ++   +++v+ls  +++qak+l+  +k
  Kalax.0080s0037.1.p 331 FCEALHHYNAIDESLvSSFVNEYKMGIKVVEDQLLGVKIISSM---REMRRREVD-----KEIFK--ELRQVRLSFGNVSQAKYLVGLFK 410
                          ***************666666666777889******8886643...333222222.....34555..4899******************* PP

                 GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaW 373
                          +  y v++e+g+l l+Wk++p+++vS W
  Kalax.0080s0037.1.p 411 GA-YWVQNEHGQLALCWKSKPVTVVSIW 437
                          66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.22638419IPR005202Transcription factor GRAS
PfamPF035149.8E-7066437IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDASYLDEFV LQVDQDPTDE FLNHEDVERL LEMETELMSS EPQVSSIEEA ANQEGLLINE  60
NIGVTDLLLM GAEALEAQNW YGASTVISRL YEVLNHQEPG EHGNAFSRLA SFFTKGLHEK  120
LDVAHPPLQR PVHQEVQETV IFRQEKNTMS AFQMLQELTP YVKFAHFTAN QAILEATKGD  180
EQVHIIDFDI MDGIQWPPFM TDLTLRQNAS LKITAAVTST ASKREANMTQ QTGRRLKEFA  240
DSINLPFTFN SFFMTREEDL DMIMDPSQTG CPGPKVTANC IVNQFYMPQK SSSQVGMFLN  300
GVKKLNLKVL VLVEEELHSL STKSSSFVDF FCEALHHYNA IDESLVSSFV NEYKMGIKVV  360
EDQLLGVKII SSMREMRRRE VDKEIFKELR QVRLSFGNVS QAKYLVGLFK GAYWVQNEHG  420
QLALCWKSKP VTVVSIWAPP TSSNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-337243927380Protein SCARECROW
5b3h_A2e-337243926379Protein SCARECROW
5b3h_D2e-337243926379Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276350.11e-124PREDICTED: nodulation-signaling pathway 2 protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-36GRAS family protein