PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0077s0088.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 418aa    MW: 46497.5 Da    PI: 6.6205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0077s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
  Kalax.0077s0088.1.p 14 KGLWSPEEDEKLLRHITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                         678*******************************************97 PP
2Myb_DNA-binding47.25.2e-1567110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++++eE+ ++v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Kalax.0077s0088.1.p  67 RGAFSQEEENIIVELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-27664IPR009057Homeodomain-like
PROSITE profilePS5129417.886961IPR017930Myb domain
SuperFamilySSF466891.27E-2812108IPR009057Homeodomain-like
SMARTSM007173.4E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
CDDcd001674.07E-111761No hitNo description
PROSITE profilePS5129425.83162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2565116IPR009057Homeodomain-like
SMARTSM007175.5E-1366114IPR001005SANT/Myb domain
PfamPF002492.0E-1367111IPR001005SANT/Myb domain
CDDcd001671.78E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT NYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEENIIVE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
VDPNTHRPIS EMEAAEQERS ATEVAAISLQ ASYENNNKLS AAGSEEAISM HLIDPSSDSL  180
NMKPNSVSID NYHSSYEANS KFSHNMTQDF FLDRCETSKI TSGQPDMLGG YLSFIAPSSL  240
TSTQASTVPF NFCSRPSGSS PIPDQQFSNN NLVPSIFPSI SNSMFLSNNT SSASVISDTN  300
QSIGSYDWDQ RQHGTNACSY PWEMEAKSIG HLEEAKWSEY LQNTTSSFGT LQSGGGNSNL  360
FNGCEMIKPE PAHNGSSSGA SLLWHHQMNQ QQQQHSSQAE VYAKDLQTLT MAFEQTF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024186447.11e-107transcription factor MYB61-like
TrEMBLA0A2P1NQ881e-107A0A2P1NQ88_ROSHC; MYB61
STRINGPOPTR_0005s00340.11e-106(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-93myb domain protein 61