PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0077s0058.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 211aa MW: 22863.9 Da PI: 9.4668 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.9 | 1.4e-18 | 137 | 170 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+ kTp+WR gpdg+ktLCnaCG++y++ + Kalax.0077s0058.2.p 137 CKHCGSEKTPQWRAGPDGPKTLCNACGVRYKSGR 170 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.374 | 131 | 167 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.9E-15 | 131 | 181 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-15 | 134 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.9E-14 | 135 | 168 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.34E-12 | 136 | 184 | No hit | No description |
Pfam | PF00320 | 2.2E-16 | 137 | 171 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 137 | 162 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEVKLESEEE EELEWLSNKD VFPSVETFVD VIPVEPSTAV LKHVSPVSVL ENSISSFGSN 60 NSNDSNAVIT TCCIGRGLAP PIRRPRSRGS QKRRRGGFVD ISSQQWFICC SSIHANKTGN 120 NATKASGTAS GITGRKCKHC GSEKTPQWRA GPDGPKTLCN ACGVRYKSGR LCPEYRPASS 180 PTFSSAVHSN SHRKILEMKK MKQHNGKPCG * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023006312.1 | 3e-57 | GATA transcription factor 1-like isoform X2 | ||||
Swissprot | Q8LAU9 | 2e-50 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A2R6R8Z8 | 5e-55 | A0A2R6R8Z8_ACTCH; GATA transcription factor | ||||
TrEMBL | B9RWP4 | 1e-55 | B9RWP4_RICCO; GATA transcription factor, putative | ||||
STRING | Lus10023684 | 2e-60 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 4e-45 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0077s0058.2.p |