PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0077s0058.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 254aa    MW: 27537.9 Da    PI: 8.7729
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0077s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18180213134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +Cg+ kTp+WR gpdg+ktLCnaCG++y++ +
  Kalax.0077s0058.1.p 180 CKHCGSEKTPQWRAGPDGPKTLCNACGVRYKSGR 213
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.374174210IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-15174224IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-14177237No hitNo description
Gene3DG3DSA:3.30.50.103.9E-14178211IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.37E-13179227No hitNo description
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
PfamPF003202.9E-16180214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGFFDTAPSA CFIDDLLNFN IDDTDRDKAN GSKNPKSLSP PNTFFPLPES EEEEELEWLS  60
NKDVFPSVET FVDVIPVEPS TAVLKHVSPV SVLENSISSF GSNNSNDSNA VITTCCIGRG  120
LAPPIRRPRS RGSQKRRRGG FVDISSQQWF ICCSSIHANK TGNNATKASG TASGITGRKC  180
KHCGSEKTPQ WRAGPDGPKT LCNACGVRYK SGRLCPEYRP ASSPTFSSAV HSNSHRKILE  240
MKKMKQHNGK PCG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022722855.13e-62GATA transcription factor 1-like
RefseqXP_022722856.13e-62GATA transcription factor 1-like
RefseqXP_022722857.13e-62GATA transcription factor 1-like
RefseqXP_023006312.15e-62GATA transcription factor 1-like isoform X2
SwissprotQ8LAU93e-53GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A438HVL84e-60A0A438HVL8_VITVI; GATA transcription factor 1
STRINGVIT_05s0051g00450.t012e-60(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.16e-47GATA transcription factor 1