PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0074s0035.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 520aa    MW: 58761.1 Da    PI: 6.3564
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0074s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS273.27.9e-841495174374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsP 89 
                           L+++Ae v  ++l++a++lL +   l+s +g+++qR+++yf eAL++++ r++ +l+ +  ++  +  + +e+  + +l     +   P
  Kalax.0074s0035.1.p 149 SLFSAAESVVLEQLARATRLLDNCDLLSSCTGSTVQRVVHYFSEALREKIDRQSGRLSMKGLSKLRN-IHIEEACVIPHLvflsCYRRIP 237
                          699*************************************************666666444333333.333333333333444467788* PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          + +  h++  qaI+e v+ +++vH+iDf +++G+ W  L+qaLasR+++p   l++T+v     +s+  +e  g+rL++fA+ lg+pf f
  Kalax.0074s0035.1.p 238 FTQPPHFAGMQAIMENVADSKKVHVIDFRVTYGVCWTILIQALASRDAPPLeYLKLTAVRT---NSNSDIEDAGKRLSDFAQCLGIPFAF 324
                          **********************************************9887669*******9...5799********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +v++++++ +l+ + ++++ +Ea+aV   + l ++l    +++++ d++++++  ++P ++v++e ea++n++ F +rf+eal yysa+f
  Kalax.0074s0035.1.p 325 RVVMVDDMLNLSEDLFELEDDEAVAVYAPYLLRTML----CIPDRLDHMMRVISCINPCIMVMIEVEANTNAPCFGKRFTEALFYYSAFF 410
                          ******************************999998....99999********************************************* PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          d+l +++ + + eri++E    g++i+n++++eg++r+ rh +l+ Wr  + ++G+++ +ls +   qa+l+ ++++ ++  +++ e +s
  Kalax.0074s0035.1.p 411 DCLTTSMESSDPERIFLESSHCGQDIRNILTTEGEARTTRHVKLSIWRTFFARFGYTETKLSRSSLYQANLVRKEYPtGRYCNIKMECKS 500
                          *****************************************************************************88889******** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          lv+gWk+ p+vsvSaW+
  Kalax.0074s0035.1.p 501 LVFGWKGTPMVSVSAWK 517
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.799120496IPR005202Transcription factor GRAS
PfamPF035142.7E-81149517IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MRKVAITELT DQQQRAQVPS SFASLPVQYY LKDRGKMRWT PGENSNNVEK GDTATFIYQA  60
ADIPELYRSP LQQSHKEIVS QSSTDSMCPK TDNKSLTAEE IFKVAGKKFI LSSSFEGLEG  120
DPSRFSNQTD IHYSGFSEEQ INDVELAGSL FSAAESVVLE QLARATRLLD NCDLLSSCTG  180
STVQRVVHYF SEALREKIDR QSGRLSMKGL SKLRNIHIEE ACVIPHLVFL SCYRRIPFTQ  240
PPHFAGMQAI MENVADSKKV HVIDFRVTYG VCWTILIQAL ASRDAPPLEY LKLTAVRTNS  300
NSDIEDAGKR LSDFAQCLGI PFAFRVVMVD DMLNLSEDLF ELEDDEAVAV YAPYLLRTML  360
CIPDRLDHMM RVISCINPCI MVMIEVEANT NAPCFGKRFT EALFYYSAFF DCLTTSMESS  420
DPERIFLESS HCGQDIRNIL TTEGEARTTR HVKLSIWRTF FARFGYTETK LSRSSLYQAN  480
LVRKEYPTGR YCNIKMECKS LVFGWKGTPM VSVSAWKST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4115451627378Protein SCARECROW
5b3h_A1e-4115451626377Protein SCARECROW
5b3h_D1e-4115451626377Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-54RGA-like 1