PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0073s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 530aa    MW: 58368.7 Da    PI: 4.9046
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0073s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.71e-1271565171373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                          lv++L++cAe ++ gdl+la +l+ +++ l  + ++   + ++aayf+ AL++r++      +  l+   t+     e+   ++ ++e++
  Kalax.0073s0008.1.p 156 LVHTLMTCAEWLQRGDLRLAGTLVDEMRSLleRVNSSCGIWKVAAYFVDALNRRVFC-----AGGLSL--TT---PYENEILYHHYYEAC 235
                          689**************************976666667999***************8.....323333..33...3455567789***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          P+lkf+h+taNqaIlea+eg+++vH++Df++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ ++ l+e+g+rLa++A++++v+f f
  Kalax.0073s0008.1.p 236 PYLKFAHFTANQAILEAFEGHDCVHVVDFNLMHGLQWPALIQALALRPGGPPVLRLTGIGPPSHDGRDPLREIGHRLAELARSVNVRFAF 325
                          ****************************************************************************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          + ++a rled+++++L+v+ +Ea+aVn+++q hrll+++   + ++d+vL  ++sl+Pk+v+v+eqea+hn+++Fl+rf+eal+yys++f
  Kalax.0073s0008.1.p 326 RGVAAPRLEDVRPWMLQVSANEAVAVNSIMQFHRLLASDSIHSPPIDSVLTWIRSLNPKIVTVIEQEANHNQPQFLDRFTEALYYYSTMF 415
                          **9999******************************88877777********************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          dslea++p   ++++ + +++l+rei++v++ceg++r+erhe l+ Wr r++e+GFkp++l+++a kqa++ll  ++ +gy+vee++g+l
  Kalax.0073s0008.1.p 416 DSLEAGAP---QAEKQLAEVYLQREICDVLCCEGSAREERHEPLAMWRIRFTESGFKPLHLGSNAFKQASMLLTLFSAEGYSVEENEGCL 502
                          ******64...5667788899********************************************************************* PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgW++rpL+s+SaW
  Kalax.0073s0008.1.p 503 TLGWHSRPLISASAW 517
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120415.6E-303298IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.1E-1832104No hitNo description
PROSITE profilePS5098562.576130498IPR005202Transcription factor GRAS
PfamPF035143.5E-125156517IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAQYETSSSS TASSGSSSSC LTGKLAAVPE IDGQLAGAGY RVRSSELNQV AQRLERLETV  60
MVSAPSDVSQ LASDAVHYNP SDLAAWVDSL LSEFSQPQLD QLQSQPSNYS DLGYQDDGVV  120
GVAVSELQYP TAAMGESWTH APPQVDVVEE DSGIRLVHTL MTCAEWLQRG DLRLAGTLVD  180
EMRSLLERVN SSCGIWKVAA YFVDALNRRV FCAGGLSLTT PYENEILYHH YYEACPYLKF  240
AHFTANQAIL EAFEGHDCVH VVDFNLMHGL QWPALIQALA LRPGGPPVLR LTGIGPPSHD  300
GRDPLREIGH RLAELARSVN VRFAFRGVAA PRLEDVRPWM LQVSANEAVA VNSIMQFHRL  360
LASDSIHSPP IDSVLTWIRS LNPKIVTVIE QEANHNQPQF LDRFTEALYY YSTMFDSLEA  420
GAPQAEKQLA EVYLQREICD VLCCEGSARE ERHEPLAMWR IRFTESGFKP LHLGSNAFKQ  480
ASMLLTLFSA EGYSVEENEG CLTLGWHSRP LISASAWHAD VTSAAATSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6014951712378Protein SCARECROW
5b3h_A6e-6014951711377Protein SCARECROW
5b3h_D6e-6014951711377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073596.10.0DELLA protein SLR1-like
SwissprotQ8S4W71e-155GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2H4X2W30.0A0A2H4X2W3_CAMSI; DELLA protein 2
STRINGXP_008343960.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-151GRAS family protein