PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0072s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 284aa    MW: 31303.7 Da    PI: 6.6094
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0072s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.61.4e-24117175259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgy WrKYGqK++ + ++prsYYrCt++ +C + k+v++++++p    itY+++H+++
  Kalax.0072s0046.1.p 117 DDGYGWRKYGQKPILNMKYPRSYYRCTHSdQCDALKQVQKTDDNPPSYMITYTNHHKCS 175
                          8****************************9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-24105175IPR003657WRKY domain
PROSITE profilePS5081120.564111172IPR003657WRKY domain
SuperFamilySSF1182901.14E-22112176IPR003657WRKY domain
SMARTSM007741.2E-29116176IPR003657WRKY domain
PfamPF031065.9E-23117174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEENSASDGV LSAIHELLHG RDSLNELLGL LGQQLHFSPP GALISATAHA VSVLGAFENS  60
LSLLSGERHV EAASQRAPAK SMISASSSLG VRRPLYKGRS SRHKVSWTRH TPVLVDDDGY  120
GWRKYGQKPI LNMKYPRSYY RCTHSDQCDA LKQVQKTDDN PPSYMITYTN HHKCSRSSVE  180
DLPNPNYMDT GDSSLLINFA SQRATDHYCH NIPVKNLWPV KEEEDTGDKH CLSPDDYLPS  240
TSSHFQVSET QHSDESGAAA SSVTTASSHL FSYLDELRAF LLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-17117174968OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-20WRKY DNA-binding protein 70