PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0071s0060.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | DBB | ||||||||
Protein Properties | Length: 305aa MW: 33121.9 Da PI: 7.688 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.6e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ e++ fC ++ lC +C H+ H+ Kalax.0071s0060.1.p 4 QCDVCSSREASVFCSADEAALCSSCDHRVHHAnklaskHQ 43 7******99******************9964446666676 PP | |||||||
2 | zf-B_box | 32.9 | 1.3e-10 | 54 | 95 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++++C+ ++ek++ lfC++++ lC+dC +++H+ H Kalax.0071s0060.1.p 54 DAPVCDICQEKRAFLFCQQDRAVLCKDCDFSIHSAneytqkH 95 6799*****************************655555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.95 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.37E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.0E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-16 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.267 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-8 | 54 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.93E-10 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MKIQCDVCSS REASVFCSAD EAALCSSCDH RVHHANKLAS KHQRFSLVHP DKNDAPVCDI 60 CQEKRAFLFC QQDRAVLCKD CDFSIHSANE YTQKHSRFLL TGVKLSAYVS SSAAAAKTTA 120 SETSLTGSCD LVPDFKSQPL NKKSNSVSNQ TLNPQSLAAE RIASPSSSGG GESVALRNNV 180 GISEYLIEML PGWHVEDFLD STSAPYGFSK GDDSMPTFNN TNFQTSDLSS VPLQNAAIWV 240 PQAPQPPKQA SHFATSHLTG NISFKDATNT KANRRLADEG FAVPQISPQF TNTSSKRSRP 300 VRYY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017685.2 | 1e-107 | PREDICTED: B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 4e-75 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A061FC44 | 1e-104 | A0A061FC44_THECC; Salt tolerance 2, putative isoform 1 | ||||
STRING | EOY14910 | 1e-105 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 6e-74 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0071s0060.1.p |