PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0068s0076.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 675aa    MW: 74475.9 Da    PI: 5.2746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0068s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14475521455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kalax.0068s0076.1.p 475 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 521
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-5513196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.79471520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-19471539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-16474525No hitNo description
PfamPF000104.6E-12475520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18475538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17477526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MAGVPPGTGG GRLQSSLQAS VQAIQWTYSL FWQLSPQNGN LVWADGYYNG AIKTRKTIQS  60
MEVSAEEASL QRSQQLRELF DSLSAGDAGE APARRPSASL SPEDLTESEW FYLMCVSFSF  120
PLGVGLPGKA YARRQHVWLT GANEVESKVF SRAILAKSAR VQTVLCIPVA DGVVEFGSTE  180
MIQEDLGLVR HVKTFFHDYN RSQLAPPPKP ALSGHSTSNP ATSSQCFHSP PPFAGMSSNN  240
NHSNPGNNDE DEDEEEENEE PGGLDSEAGT GRVSGRVAGE VSELMQMEIS DLDIRVRSPE  300
DASNNLEPDF NVLPASRIQK NKDDGHFTTE SYKIDSARRW ALMQNQMRTG GVHLLQPPPF  360
SDLTQEDSHY SHTVSSILHH HQQPPLPESF FSAEDLILSA DSAFAKWTLY GDQVAATTTG  420
GAGSQWLLKF ILFTVPYLHG KYPEENEPCK SADMSEAAQQ LKKGAGAPQE DMSVNHVLAE  480
RRRREKLNER FVILRSLVPF VTKMDKASIL GDTIEYLKQL RRKIQDLEVK AKQMEVEQRS  540
GLTSQDRTWS GTGSEKRKMR AVEVTGSPKP VTVVEPPPPP PPVELLGLMD ANTVQVSIIE  600
TDALVELQCP YREALLLDVM MKLRDLRIEV TAVQSSVTDG SFVAELRAKV KENVNGKKMK  660
IAEVKRAIYQ IIPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-23131979193Transcription factor MYC3
4rqw_B8e-23131979193Transcription factor MYC3
4rs9_A8e-23131979193Transcription factor MYC3
4yz6_A8e-23131979193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1479484ERRRRE
2480485RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGEOX947960.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.19e-95bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]