PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0067s0132.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 434aa    MW: 47313.1 Da    PI: 6.0981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0067s0132.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rgrWT+eEd++lv+++++ G g+W++ +++ g+ R++k+c++rw +yl
  Kalax.0067s0132.1.p 14 RGRWTAEEDDILVNYINKNGIGSWRSLPKKAGLLRCGKSCRLRWINYL 61
                         8*******************************99************97 PP
2Myb_DNA-binding49.88e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T +E++ ++++++ lG++ W++Ia+ ++ gRt++++k++w++ 
  Kalax.0067s0132.1.p  67 RGNFTSDEQDTIIKLHASLGNK-WSLIANQLP-GRTDNEIKNYWNST 111
                          89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.131961IPR017930Myb domain
SuperFamilySSF466891.72E-2811108IPR009057Homeodomain-like
SMARTSM007177.9E-121363IPR001005SANT/Myb domain
PfamPF002492.7E-141461IPR001005SANT/Myb domain
CDDcd001678.50E-101661No hitNo description
PROSITE profilePS5129424.21562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2465115IPR009057Homeodomain-like
SMARTSM007173.0E-1466114IPR001005SANT/Myb domain
PfamPF002493.0E-1467111IPR001005SANT/Myb domain
CDDcd001671.12E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGRAPCCAKV GLNRGRWTAE EDDILVNYIN KNGIGSWRSL PKKAGLLRCG KSCRLRWINY  60
LRSDLKRGNF TSDEQDTIIK LHASLGNKWS LIANQLPGRT DNEIKNYWNS TLSRRVDTFR  120
RPVAEGQSQV LISGLTSSSG AAGEGAVTIV VVNRRRGRTS RAAMKKNKNS INERSNKSKP  180
VGGNQALYES NPIHSSSYNL SSVTATLSRS HSSGSSITSA ATAPGSPLLT LPQTPNLEKE  240
GCLLLPADDE DHALESLVLE SLLTSQNDTQ RGAQHQGDLV SKDASDCERV DLSFDDIGNF  300
DVELVEVNGA SGVLAGSRSS NDTINNKSSS SSSSNNVGHG VLKEASLNHQ SMILGFEECA  360
SLGADWDWEN IVHQDDDHNN DQQWSSNIEE DGSIAWLWDY AHHQDSGGNN GVGKNQEKYY  420
EEHREAMVAW LLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241211625128MYB TRANSFORMING PROTEIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.16e-71myb domain protein 111