PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0067s0049.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25808.2 Da    PI: 8.806
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0067s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-251059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n + rqvtfskRrng+lKKA+EL +LCdaev v++fsstgk+++++s
  Kalax.0067s0049.1.p 10 RIDNPTSRQVTFSKRRNGLLKKANELAILCDAEVGVMVFSSTGKVHDFAS 59
                         8***********************************************86 PP
2K-box78.91.2e-2675169498
                K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                           ++++ ++++ e +q+e+a L+++++++q+++R+l G+dL+ L +keLq Le++L+ksl++iR++K++ll++qi el  k + +++en +
  Kalax.0067s0049.1.p  75 EQQQQDSSSEIEFWQREAAMLRQQLQSIQESHRQLTGDDLSGLGIKELQDLETHLDKSLRSIRTTKDKLLTDQILELNAKGNIVRQENLE 164
                          4445578999******************************************************************************** PP

                K-box  94 Lrkkl 98 
                          L +k+
  Kalax.0067s0049.1.p 165 LYQKV 169
                          *9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.698161IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002653.35E-42278No hitNo description
SuperFamilySSF554554.29E-31289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2481169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.87885181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGRGKVVIRR IDNPTSRQVT FSKRRNGLLK KANELAILCD AEVGVMVFSS TGKVHDFAST  60
SMTSVIDRYS KSKEEQQQQD SSSEIEFWQR EAAMLRQQLQ SIQESHRQLT GDDLSGLGIK  120
ELQDLETHLD KSLRSIRTTK DKLLTDQILE LNAKGNIVRQ ENLELYQKVY GTKDVHAQCS  180
SKTPAIRHDL NIGEDAHVPV QLQLCQPQNQ NYETPTRATK LGRLYLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20186186MEF2C
5f28_B5e-20186186MEF2C
5f28_C5e-20186186MEF2C
5f28_D5e-20186186MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016748927.11e-112PREDICTED: MADS-box transcription factor 23-like isoform X5
SwissprotQ6EP496e-86MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8PCJ81e-111A0A1U8PCJ8_GOSHI; MADS-box transcription factor 23-like isoform X5
STRINGVIT_18s0001g07900.t011e-104(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.19e-75AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]