PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0066s0080.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 267aa    MW: 30246.9 Da    PI: 6.399
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0066s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.6e-141461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W+++Ed +l d++   G  +W++I+++ g+ R +k+c++rw +yl
  Kalax.0066s0080.1.p 14 RGLWSPDEDRKLRDYIINNGHACWSSIPAKAGLQRNGKSCRLRWINYL 61
                         788*******************************************97 PP
2Myb_DNA-binding506.7e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T eE e+ + ++++lG++ W+ I+++++ gRt++++k++w++ 
  Kalax.0066s0080.1.p  67 RGAFTLEEREIVLTLHRMLGNK-WAEISKHLP-GRTDNEIKNYWHSN 111
                          89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-20664IPR009057Homeodomain-like
PROSITE profilePS5129415.046961IPR017930Myb domain
SuperFamilySSF466893.41E-2612108IPR009057Homeodomain-like
SMARTSM007172.6E-91363IPR001005SANT/Myb domain
PfamPF002494.5E-121461IPR001005SANT/Myb domain
CDDcd001676.89E-81761No hitNo description
PROSITE profilePS5129424.11362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2365114IPR009057Homeodomain-like
SMARTSM007173.9E-1566114IPR001005SANT/Myb domain
PfamPF002492.2E-1467111IPR001005SANT/Myb domain
CDDcd001679.06E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGHKPNHQKV KHRRGLWSPD EDRKLRDYII NNGHACWSSI PAKAGLQRNG KSCRLRWINY  60
LRPGLKRGAF TLEEREIVLT LHRMLGNKWA EISKHLPGRT DNEIKNYWHS NLKSRTNNVK  120
VEASQSPSAA QQMSSSMSSI SLQSLETTNS GSSLMGSSST VTTAYQPDTP AAKFASGCLM  180
PKLLFAEWFS PEQEQQEFPV FFNGDGEQVV SRDCFNQLPS TQDYFLEELS FEEGLFCDDF  240
NTSNGLDFSP PYELKDLIAG DEIYIPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141177109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038672.25e-74PREDICTED: transcription factor LAF1
TrEMBLA0A061G1E12e-72A0A061G1E1_THECC; Myb domain protein 18, putative
STRINGEOY231733e-73(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.16e-55myb domain protein 45