PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0063s0088.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 592aa    MW: 65698.2 Da    PI: 5.8828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0063s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.4e-182370148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd llv+ vk++G ++W+t+ ++ g+ R++k+c++rw+++l
  Kalax.0063s0088.1.p 23 KGPWKPEEDMLLVEFVKKHGERDWNTVRKHSGLARCGKSCRLRWNNHL 70
                         79********************************************97 PP
2Myb_DNA-binding45.91.3e-1476119146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g+ +++E++l+ +++ q G++ W++Ia++++ gRt++++k++w++
  Kalax.0063s0088.1.p  76 KGPISPDEEKLICQLHSQIGNK-WARIAAMLP-GRTDNEIKNFWNT 119
                          6889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6981874IPR017930Myb domain
SuperFamilySSF466896.36E-2921117IPR009057Homeodomain-like
SMARTSM007173.4E-152272IPR001005SANT/Myb domain
PfamPF002498.9E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-232478IPR009057Homeodomain-like
CDDcd001676.04E-132570No hitNo description
SMARTSM007171.2E-1375123IPR001005SANT/Myb domain
PROSITE profilePS5129418.12675125IPR017930Myb domain
PfamPF002492.3E-1376119IPR001005SANT/Myb domain
CDDcd001671.85E-978119No hitNo description
Gene3DG3DSA:1.10.10.606.6E-2279123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MVAKGKDEKL GSSSSSSWAE LKKGPWKPEE DMLLVEFVKK HGERDWNTVR KHSGLARCGK  60
SCRLRWNNHL RPNLRKGPIS PDEEKLICQL HSQIGNKWAR IAAMLPGRTD NEIKNFWNTR  120
IKRLSRKGVP LYPPEIQSPR PDLLNPYLQH LDPQNNHSSS SPSTSSSSTL QSNYQTPTLL  180
SPTTPTSHSL LFPSQPQQFH DYDDVVLHDS MAMYDAALEN SRHQQQMLAS AMMNSMATQP  240
PLPSSSFQRF KRQRSIPNLT IPVRHVALHP FSPLGLSTSS SPLGRSVSMA GSPTASTTYM  300
HIASAPHSYA SSPTGMVLSP TALQLGVSNP HPTMRLPLSS PPIVTCRPTY LPRTSSFAFD  360
PMLFDLNPAT THAHHHMQTM DDAIDNELSF SVEDLGILMD PETTISPNTC SSSHINEPQQ  420
DGAVPAADRN NAGPLDEFLK EAEMISIRDV EEAEFSTEQA HAFLNELESD MEESRLNCSS  480
SGQALMDQPE AQLAVGERQM ESMAELELNN ELANLLEANP LGHSFWSNAN DNDWLANSQF  540
SQPSNDHHQQ QQQYQINHFM DDKYGYGDAS ADYSSMPVAA SSSWDNMPGI Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31201234106B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26930.12e-56myb domain protein 97