PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0061s0128.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 838aa    MW: 91448.9 Da    PI: 6.3863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0061s0128.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.6e-20601698296
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +kvl++sdv+++gr+vlpkk ae+h  ++  + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fvk+ngL+egDf+v++  +
  Kalax.0061s0128.1.p 601 QKVLKQSDVGSLGRIVLPKKEAETHlpQLTARDGINIAMEDiGTSNVWNMRYRFwpNNKSRMYLLE-NTGDFVKSNGLQEGDFIVIY--S 687
                          79*************************999999********7778*******99777777777777.********************..6 PP

                          S.SEE..EEEE CS
                   B3  87 r.sefelvvkv 96 
                          + ++++++++ 
  Kalax.0061s0128.1.p 688 DiKCGKYMIRG 698
                          77999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-27594706IPR015300DNA-binding pseudobarrel domain
CDDcd100154.75E-34598699No hitNo description
SuperFamilySSF1019368.44E-22599693IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-19600702IPR003340B3 DNA binding domain
PROSITE profilePS5086310.348600702IPR003340B3 DNA binding domain
PfamPF023623.0E-16601697IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MVTKAGVGLE EGGRRSDNLM HAAPPDAVEV DGDDVMVDFS CFGGYSSAEA AMEEADHQDL  60
MENAAAIFCD DLIPPLPDFQ CMSSSSSSSS STAVKPVAYR STASSSVSSS SSSWAVLRSD  120
GEEQHNAGGE CINNHQPQQV ALSSTALMEM HPQSGQSNRL DEDDDIGCMD VMETLSYMDL  180
LDENGQVWDY SDSPVFDCNR EEAFQYNREA ENQPQPPHAA AATASEFVHE KGDNSEGLDK  240
SEDLAMVFFE WLKSNKESVS AEDLRSIKLK KSTIESAAKR LGNGKEGMKR LLQLILEWVQ  300
QHQLQRKRRR EEEAAAAATM VGGQAGFPNQ PYPVQYPTQP FQSQDADFSN SNLQPDPIGF  360
TGAVNPPPWS VGSSAGFDHM VAVGVPAAGA GYVGGGDPFG HLSNMVDQPA ATPWPAAAPT  420
FCMNYSNNAR SVQNLSPVAL QQAYPFGAGA FNQYPYQYYP AVGNGSAFNG PASDDGLART  480
GSSATKEARK KRMARQRRFS SHHRHHYHHH NHSSSSNSHG HHHVNNGQSN QMNMAVGTAS  540
PHGRVNMEEN YANIGQPPGG GNWACWGNAA APPLPLVPNV AKSFQVNEGL KAEKNLRFLL  600
QKVLKQSDVG SLGRIVLPKK EAETHLPQLT ARDGINIAME DIGTSNVWNM RYRFWPNNKS  660
RMYLLENTGD FVKSNGLQEG DFIVIYSDIK CGKYMIRGVK VRQQGPRPDN RRSGKALKKN  720
PASTSNGPSP SPNNTPHKET SPKPDMIKEL EAGNNMDLPT LKKNWQPCMR RIAAADGTSD  780
RPLNECPEFV AAMAARVFKF ADVKISSLTL ELMIEHPIYT SLKRSLNQRV GLKETLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-375967041109B3 domain-containing transcription factor FUS3
6j9b_D6e-375967041109B3 domain-containing transcription factor FUS3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305309RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024550.11e-152PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBLR4TV461e-153R4TV46_POPTO; ABI3
STRINGPOPTR_0002s25330.11e-148(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.17e-66B3 family protein