PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0058s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 630aa    MW: 69560.6 Da    PI: 5.2606
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0058s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.32.3e-1402656241374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv++L++cA+a+++++l+ a++l++++  la++++ +m+++a+yf+eALa+r+++    +y    p+e+   n s +   l  f+e++P+
  Kalax.0058s0039.1.p 265 LVHTLMACADAIQQSNLKVAETLINQIGMLAASQAGAMRKVATYFAEALARRIFN----CY----PQESI--NPSFTDLLLMHFYETCPY 344
                          689***************************************************9....44....33333..22333333446******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkf+h+taNqaIlea++++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++k++l+e+g rLa++Ae+++v+fef+ 
  Kalax.0058s0039.1.p 345 LKFAHFTANQAILEAFSNKKKVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPSPDNKDRLREVGLRLAQLAETIHVDFEFRG 434
                          ****************************************************************************************** PP

                 GRAS 181 lvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +va++l+dl+ ++L++kp   E++aVn+v++lhrll++++++e+    vL ++k+++P++v+vveqea+hn++ Fl+rf+e+l+yys++f
  Kalax.0058s0039.1.p 435 FVANSLADLDASMLELKPseTESVAVNSVFELHRLLARPGAVEK----VLTVIKEIKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTMF 520
                          ******************99999*********************....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          dsle +   ++++++++++++lgr+i++vvaceg +r+erhetle+Wr+r+++aGF++v+++++a kqa++ll  ++ +dgyrvee++g+
  Kalax.0058s0039.1.p 521 DSLEGS---TNSQDKVMSEVYLGRQICDVVACEGLDRVERHETLEQWRARFGSAGFESVHIGSNAFKQARMLLDLFSgGDGYRVEENNGC 607
                          ***999...79999**************************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaWr
  Kalax.0058s0039.1.p 608 LMLGWHTRPLIATSAWR 624
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.2E-3586152IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.7E-3486159No hitNo description
PROSITE profilePS5098568.103239603IPR005202Transcription factor GRAS
PfamPF035147.9E-138265624IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MKNLPIPSHT HTQDSIPNPH SNFPLNTHSL QTYSYTHIHQ TTASMKRENQ YLYPHPDPSA  60
AGSSSSTGGK TKVCWEDDSL PEAGMDELLA VLGYKVKSSD MAEVAQKLEQ LEEVMGSVRE  120
DGLSHLASET VHYNPSDISN WIENMLSEFV PPSFDSNLQP LPPTSIDSFI PQVGPVDFPV  180
MLDQPKLSPI FGGGDSSSSL PDYDLKAIPG NRIIYPQNQQ QQQLEELSSS ANKRLKPTAP  240
PSEAPLTTST RPVVLVDSQE AGVRLVHTLM ACADAIQQSN LKVAETLINQ IGMLAASQAG  300
AMRKVATYFA EALARRIFNC YPQESINPSF TDLLLMHFYE TCPYLKFAHF TANQAILEAF  360
SNKKKVHVID FSMNQGMQWP ALMQALALRP GGPPAFRLTG IGPPSPDNKD RLREVGLRLA  420
QLAETIHVDF EFRGFVANSL ADLDASMLEL KPSETESVAV NSVFELHRLL ARPGAVEKVL  480
TVIKEIKPEI VTVVEQEANH NGPVFLDRFT ESLHYYSTMF DSLEGSTNSQ DKVMSEVYLG  540
RQICDVVACE GLDRVERHET LEQWRARFGS AGFESVHIGS NAFKQARMLL DLFSGGDGYR  600
VEENNGCLML GWHTRPLIAT SAWRIGSSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6426062313377Protein SCARECROW
5b3h_D2e-6426062313377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594609.10.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2C9UFS90.0A0A2C9UFS9_MANES; Uncharacterized protein
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein