PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0057s0135.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 347aa    MW: 39260.6 Da    PI: 5.4636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0057s0135.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l+++++ +G g+W+ ++ + g+ R++k+c++rw +yl
  Kalax.0057s0135.1.p 14 RGLWSPEEDEKLIRYITAHGYGCWSEVPDKAGLQRCGKSCRLRWINYL 61
                         788*******************************************97 PP
2Myb_DNA-binding55.41.4e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr+T+eE++l++ +++  G++ W+ Ia++++ gRt++++k++w+++
  Kalax.0057s0135.1.p  67 RGRFTQEEEKLIISLHEVVGNR-WAQIASHLP-GRTDNEIKNYWNSW 111
                          89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.176961IPR017930Myb domain
SuperFamilySSF466895.24E-3011108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002498.7E-151461IPR001005SANT/Myb domain
CDDcd001672.71E-111761No hitNo description
PROSITE profilePS5129426.06762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007172.9E-1766114IPR001005SANT/Myb domain
PfamPF002494.9E-1667111IPR001005SANT/Myb domain
CDDcd001674.64E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGHHTCCNQQ KVKRGLWSPE EDEKLIRYIT AHGYGCWSEV PDKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TQEEEKLIIS LHEVVGNRWA QIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
RMQHNLSTTA FHGGYTFSTA PDMTTEQYPF HYELLNYNPN PNNPSPFENF VGTKPLPTLD  180
TDDHHQEVPS LHPSFFMFDT SSVISQDSTA ATTQLLHIPS SASNSDLAWC FVDHQAVAVG  240
GHVEMGLSTD INFMLPALVD DGDPHHLLEL TYDDQCLEKQ HDLQQQGYQS TNSNNNDELL  300
SWDVSQQCPN FLFWDNAVDG SAEDEIAPFS SLVGTGTSPY PPSLLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A371EII04e-95A0A371EII0_MUCPR; Transcription factor MYB61 (Fragment)
STRINGXP_007158529.13e-95(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.17e-83myb domain protein 103