PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0057s0131.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 330aa MW: 36265.5 Da PI: 6.3872

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0057s0131.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.4	1.6e-29	152	210	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs +prsYYrC+s+ gC ++k+ve+s+ dp++++itY+ +Hnh+ Kalax.0057s0131.1.p 152 TDLWAWRKYGQKPIKGSFYPRSYYRCSSSkGCAARKQVEQSSLDPNIFTITYTADHNHP 210 699**********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.2E-30	137	212	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-25	146	212	IPR003657	WRKY domain
PROSITE profile	PS50811	30.285	146	212	IPR003657	WRKY domain
SMART	SM00774	3.6E-34	151	211	IPR003657	WRKY domain
Pfam	PF03106	2.2E-24	153	210	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MIMDDNWGLH AVVNGCTQQA QEWNNAVDIQ EELLFHMGQN HHHQLPDLPF DLISSPMSFD 60 LHELEDIYKL PFGDGLASGV MLASGSNPKL AVEMQQHHQQ YEVFDGSSSS AYHLPGDNGT 120 AFVAAAAASN RAKRKNQQKR VVQHVTANGL STDLWAWRKY GQKPIKGSFY PRSYYRCSSS 180 KGCAARKQVE QSSLDPNIFT ITYTADHNHP HPTRRSSLSG VSKNKKASSA PPNKKPTPPP 240 PPPTSSLPLK DSSSSNSPTM LNMPAPTTPL MVENTSREDG IKEECSTVAV EDGSMMDLGC 300 LGFEEEIGEM GFDGYQSWFP HWLDGRSTC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-19	153	213	18	80	Disease resistance protein RRS1
5w3x_D	1e-19	153	213	18	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9FLX8	1e-45	WRK27_ARATH; Probable WRKY transcription factor 27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	8e-41	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	Kalax.0057s0131.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]