PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0056s0106.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 627aa    MW: 67546 Da    PI: 7.7343
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0056s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30244303159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Kalax.0056s0106.1.p 244 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVAsSCPVRKQVQRCADDMSILITTYEGTHNHP 303
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-32230305IPR003657WRKY domain
SuperFamilySSF1182902.09E-27237305IPR003657WRKY domain
PROSITE profilePS5081128.656239305IPR003657WRKY domain
SMARTSM007741.6E-36244304IPR003657WRKY domain
PfamPF031069.8E-27245303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MSKAKDQAAT GTGRSGAGDE GNKDGRDAAD AQIRFKSEEI ISKDDQIEAT KGEMDEVRQE  60
NQRLRMHLER LTTSYHSLWK KFQDIRQQEA TRKANYNNAS AAIIASTSLS SQPDLEEHDV  120
SLSLGRTSSS NLKKEVTVKS GSEDNHENVS DHGRMSEQGL LALGLENKQF EASKMDHTSS  180
TEPLTNNTSA DNSLDEEKKE DVMGETWPPP KTLKRSGEDE IDSHHNNGKR ARVSVRARCD  240
TPTMNDGCQW RKYGQKVAKG NPCPRAYYRC TVASSCPVRK QVQRCADDMS ILITTYEGTH  300
NHPLPAAATA MASTTSAAAS MLISGSSSTS SRPVGLGQSS TSTPATTTSV GLHGLTYNLA  360
NGMTSSQPRP HQFYIHNNSQ ISPSPNTHPT ITLDLTASNP FTSPFANPHF NRFTSSSSYD  420
PSRLFPLKST SLNFASMDSN PTPTSMSWAT NHGSVLSYGN QYPQSNNRNN HNLGSLTLAS  480
RQPHESIYQS FMQKTSAALH HQQQQQNLLP DTIAAATKAI TADPSFQTAL AAALTSIIGG  540
GASGGGNNNE KVQVSSMENL GQKMKWGDQI STQRGSGCAS SFLNTSSTAQ SSGMMFLQPS  600
SAAAAASKSK STSPSENNNH QDHNTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-19231305174WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1U7Z4T21e-131A0A1U7Z4T2_NELNU; probable WRKY transcription factor 72
STRINGXP_010242382.11e-132(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.12e-60WRKY DNA-binding protein 61