PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0051s0122.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 276aa    MW: 31009 Da    PI: 8.2787
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0051s0122.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.9e-18187221135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l
  Kalax.0051s0122.1.p 187 CSHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 221
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.2E-781275IPR016679Transcription factor, GATA, plant
SMARTSM004011.0E-17181231IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.622181217IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.0E-14185219IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.14E-14185245No hitNo description
CDDcd002024.44E-14186233No hitNo description
PROSITE patternPS003440187212IPR000679Zinc finger, GATA-type
PfamPF003208.2E-16187221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDEFFRVDDL LNFSNDDHGL SSITSDHQHQ QFKSTSEHMN HQLKSHFGGN NSLHRFNNNS  60
SFSSGTGRGA DSIGAHHFSY DFTDQLYVPN DDVAELEWLS NFVDDSFTDF NTNDLTVTLM  120
SQSHSSIPSA ARSKRSRQRT WKASTSLISS SPAPQTDRSR AKSKQGMNSM SEFVEESSSS  180
SSGVRRCSHC ASEKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTQHSN  240
SHRKVMELRR QKEVTIKQQQ QQGHVHHHTH DFQVC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138KRSRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277959.19e-81PREDICTED: GATA transcription factor 4
SwissprotO497412e-64GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A438BWC08e-80A0A438BWC0_VITVI; GATA transcription factor
STRINGVIT_15s0021g02510.t013e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-64GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]