PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0051s0102.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 28824.2 Da PI: 5.4112 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +v+++G +W+ ++ g+ R++k+c++rw++yl Kalax.0051s0102.1.p 19 KGAWSVEEDIKLMAYVTKYGCWNWRQLPKFAGLARCGKSCRLRWLNYL 66 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.2e-15 | 72 | 114 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+ T+eE++ ++++++ G++ W+ Ia+ ++ gRt++++k++w+ Kalax.0051s0102.1.p 72 RGNYTKEEEDTIIRLHESVGNK-WSVIAAQLP-GRTDNEIKNHWH 114 899*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.391 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.8E-29 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-8 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-12 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-22 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.67E-8 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 22.84 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-14 | 72 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.11E-10 | 74 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 74 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGRRPATATA AAIDSGLRKG AWSVEEDIKL MAYVTKYGCW NWRQLPKFAG LARCGKSCRL 60 RWLNYLKPDL KRGNYTKEEE DTIIRLHESV GNKWSVIAAQ LPGRTDNEIK NHWHAKLKKM 120 LKTTPSLKDK SKATTSSLTS EEVSSTCSTY KGLTDLEADK TPTDDSVSCC FQGQQKQSSS 180 SSASSSSDDM YSDMSGDLWK DLFAADGTYN YVGPADDYFH YVDSFAAAAD IGYEGLLSFP 240 CPSDVPTADE DEFLVPLWLA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 17 | 123 | 5 | 110 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021296898.1 | 5e-67 | transcription factor MYB4-like | ||||
Refseq | XP_021689975.1 | 4e-67 | transcription factor MYB30-like | ||||
TrEMBL | A0A1U8JVI8 | 1e-64 | A0A1U8JVI8_GOSHI; myb-related protein Myb4-like | ||||
STRING | EOX99262 | 4e-64 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 3e-52 | myb domain protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0051s0102.1.p |