PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0049s0076.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 302aa    MW: 33949.9 Da    PI: 5.319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0049s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT +Ed++l + ++++G ++W++ +r  g+ R++k+c++rw +yl
  Kalax.0049s0076.1.p 16 KGPWTSDEDQILTNHINLHGHPNWRALPRLAGLARCGKSCRLRWTNYL 63
                         79********************************************97 PP
2Myb_DNA-binding49.69.1e-1669114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T eE+e +++ +k+lG++ W++Ia++++ gRt++++k+ w+++l
  Kalax.0049s0076.1.p  69 RGNFTREEEETIINSHKLLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 114
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-211066IPR009057Homeodomain-like
PROSITE profilePS5129414.2081163IPR017930Myb domain
SuperFamilySSF466895.03E-2813110IPR009057Homeodomain-like
SMARTSM007175.8E-111565IPR001005SANT/Myb domain
PfamPF002493.2E-131663IPR001005SANT/Myb domain
CDDcd001673.23E-101863No hitNo description
PROSITE profilePS5129422.90764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2567118IPR009057Homeodomain-like
SMARTSM007177.0E-1468116IPR001005SANT/Myb domain
PfamPF002497.2E-1469114IPR001005SANT/Myb domain
CDDcd001674.07E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVRSPSSTKQ TAGLKKGPWT SDEDQILTNH INLHGHPNWR ALPRLAGLAR CGKSCRLRWT  60
NYLQPGIKRG NFTREEEETI INSHKLLGNR WSAIAAKLPG RTDNEIKNVW HTHLKKRLLN  120
NNQNQPQGST ATIGDSHNNR SDDFIIIDKS LFHQARDDLS NTNPLVQHAH ADRDDQNPND  180
APACNTDSHT VHVPSFSPQD SYSKASYNNC EQVPSPEAFP ETDESFWSDV LSSDYDYRSG  240
SNYTPCRQQP FLPVSDNSVV NMEMDYPQDA TGSSFPDAAA NDVNNNNNAV QDGDDVDDFW  300
FD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26141185108B-MYB
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LNC92e-61MYB13_ARATH; Transcription factor MYB13
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.13e-63myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]