PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0048s0130.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 418aa MW: 46282.9 Da PI: 6.2894 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.6e-08 | 167 | 187 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ Gd C FaHg Kalax.0048s0130.1.p 167 ACPDFRK-GNCRKGDACEFAHG 187 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-6 | 160 | 189 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.08 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 162 | 188 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-6 | 167 | 187 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.944 | 197 | 221 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 197 | 220 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MQNTHLSCLH IPGQSFSINN NIAQHSMMLG DYKFSSTSSS LHVPPWSSLA VDDPFSPLPA 60 NMNFISADGS PASFSDSAYA SLRRYLPSND ADIDGDVELL DHLGVDAEEE EEFPLDAYSC 120 DQFRMFDFKV RRCVRAKSHD WTECPYAHPG EKARRRDPRK YNYAGTACPD FRKGNCRKGD 180 ACEFAHGVFE CWLHPNRYRT QPCKDGVNCR RRVCFFAHTP DQLRVVTESS PRSVVDSYDG 240 SPLRQALEAA VTKSAMPLML SISPPATPTA DSPPVSPLTR SLSRSLGSSS VNELVVSLRQ 300 LQLNKQVKSM PRASYNLPGY GGSPRGSSLL KPGFFSLPNT PTGIQTRGAA GRHLELWERS 360 VEEEEDLEPA MERVESGRCL RAKMLEKLRN DNSLMEPAAE CSSTPDPDVG WVSELLQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021637323.1 | 1e-152 | zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 1e-121 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A2C9UAC7 | 1e-151 | A0A2C9UAC7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_009450m | 1e-151 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-108 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0048s0130.1.p |
Publications ? help Back to Top | |||
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