PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0047s0048.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 349aa    MW: 38689.4 Da    PI: 6.0525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0047s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-181562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEd +   +v ++G+g+W++++++ g++R++k+c++rw++yl
  Kalax.0047s0048.1.p 15 RGVWSPEEDAKMMAYVSKYGTGNWTAVPKKAGLRRCGKSCRLRWNNYL 62
                         899********************************************7 PP
2Myb_DNA-binding45.81.4e-1469111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++T++E+el+++++   G++ W+ Ia+ ++ gRt++++k++w++
  Kalax.0047s0048.1.p  69 DNFTPQEEELIIKLHGAIGTR-WSIIAQQLP-GRTDNDVKNYWNS 111
                          68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-26665IPR009057Homeodomain-like
PROSITE profilePS5129425.9611066IPR017930Myb domain
SuperFamilySSF466892.03E-3012109IPR009057Homeodomain-like
SMARTSM007172.0E-131464IPR001005SANT/Myb domain
PfamPF002491.3E-161562IPR001005SANT/Myb domain
CDDcd001671.11E-101862No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2366117IPR009057Homeodomain-like
PROSITE profilePS5129418.82267117IPR017930Myb domain
SMARTSM007172.3E-1367115IPR001005SANT/Myb domain
CDDcd001671.09E-970113No hitNo description
PfamPF002495.3E-1370111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMAQSTCCEK MSVKRGVWSP EEDAKMMAYV SKYGTGNWTA VPKKAGLRRC GKSCRLRWNN  60
YLRPDLKHDN FTPQEEELII KLHGAIGTRW SIIAQQLPGR TDNDVKNYWN SKLRKKLQDM  120
GIDPVTHKPY SQILADYGSI GGLRKFGHSL NKDLKNAFTQ IEGNPEEQFV HFSCRDGQVR  180
GAQSHQNVHE STDLLDQLQA IKKFTEAAPG SKNIETAVTA SPQWGCGHPT LSPTSSSSSS  240
ACSAGNTSSS LQGLNWQDYL LDDVFVPSED NMAEYFMCGD TDGSRKIEGP EPTQALSQSK  300
NIVMDNHGTG ATVIRASDAF FLDEMLAKEN EMMLLEFPSL LEDSTFES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28151177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028119397.11e-104transcription factor MYB35-like
TrEMBLA5C7N11e-103A5C7N1_VITVI; Uncharacterized protein
STRINGcassava4.1_031039m1e-102(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-67MYB family protein