PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0046s0071.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 37535.5 Da PI: 4.8137 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT eEd +l ++ + G g+W+++++ g++R++k+c++rw +yl Kalax.0046s0071.1.p 14 KGRWTDEEDAILTRYLQANGEGSWRSVPKNAGLKRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++ ++++++ +G++ W++Ia +++ gRt++++k++w+++l Kalax.0046s0071.1.p 67 RGNITPEEEDVIIRLHASMGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.557 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.52E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.91 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.80E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MVRAPCCEKE GLKKGRWTDE EDAILTRYLQ ANGEGSWRSV PKNAGLKRCG KSCRLRWINY 60 LRPDLKRGNI TPEEEDVIIR LHASMGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKLLTYS 120 TPSKSKATEP IGSAEVTAEW KPRRGRSRHW SSNKNAPVPS DDADLLRSMV ENGELEPITK 180 EKTIEADADE ESFEITEYIN EEGEDNTSSL NADESLIFSS ARGPSYFNEE QSEIFCSFDD 240 ALNIKAEETD VGVSSHSLNA SSVDQTDVFK VSKKVDTVAG KWNENKGLSL SSAGDARADW 300 DWKGLINGHK LIDEDEMLSM LWDDGSNFKS NNQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 4e-71 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0046s0071.1.p |