PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0046s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 337aa    MW: 36176.6 Da    PI: 6.0435
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0046s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17239272134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Kalax.0046s0008.1.p 239 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.0E-713308IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.24233269IPR000679Zinc finger, GATA-type
SMARTSM004015.2E-16233283IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14237270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.7E-15237296No hitNo description
CDDcd002023.95E-14238287No hitNo description
PfamPF003204.2E-15239272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSADPTSFAA DDIDCNNFFD HMEDLLDFPE DNSKSTDSAL PGLAWNTSPH SILNPDPLFV  60
GKSTGCTPDL AAALSLPYED IVQMEWLSTF VEDSFSGGNS MTFDRQNLPD TEDPSVAPFQ  120
FLSMSPISVL ESSSSSSSSS CSEGGKVLPR RPDSNVRIGG GCGRARSKRP RPLAFRPVSA  180
TQLISPPLAF NSFSESRSLT AGQRKKRKMN PLSSATPAAE TTSGADLTAS QSQAGVRKCL  240
HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFIPSLH SNSHKKVLEM  300
RTSSIDIPAA ILPGGKTASD TQPEFIPNEN AMLEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167171KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316371.37e-92GATA transcription factor 8
TrEMBLA0A2R6PLQ03e-98A0A2R6PLQ0_ACTCH; GATA transcription factor
STRINGPOPTR_0010s23010.13e-92(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-40GATA transcription factor 9